GBrowse Details

Vigan.04G185300.01

Basic Information:
Name: Vigan.04G185300.01
Multiple alignment
Variant Information
Position: Chr04:26844577..26848310 (- strand)
Length: 3734
Functional Information:
Description: Similar to Uncharacterized protein. [I1N2H6, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,1.46,23.51,4.11,2.96,25.60,4.85,9.82
Automatic updates:
Name: NM_001249621 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin (EXP2), mRNA.
PubMed ID: 26432877 NCBI(pubmed)
21261763 NCBI(pubmed)
12644651 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:26844577..26845012 (- strand)
Length: 436
Type: three_prime_UTR
Position: Chr04:26845013..26845322 (- strand)
Length: 310
Type: CDS
Position: Chr04:26846385..26846703 (- strand)
Length: 319
Type: CDS
Position: Chr04:26847442..26847589 (- strand)
Length: 148
Type: CDS
Position: Chr04:26847590..26848310 (- strand)
Length: 721
Type: five_prime_UTR


>Vigan.04G185300.01
CTTCAAATTT AACGTAACCA TCATTGAAAA CACTGAACAA AACATGCATT CTTCTACCTA TTACGTTTTT CATGGGAGTG
GGTTCCAATG ACAAGGTTGT CCTGTAGTAA ATTTTATTGA AGGACAAAAA TTGGAAGTTA AAGAAGGTTT TATGATAAGA
TAAGCTAAAA GGGACTGCAC TTTCCTTGTG TTGTAGAGAA CATGAACAAT CATGGTTTTG GTGTGAAATG AAGAAGGGTC
CTTCCCTATT TCACGTCAAA TTCCTGCCAT GTCTTGCCAT GATGCATCAT CATGTGGTGC CTCAACTTGC CTTTGTCACT
CACCCAAACA GTTTTATCAT GAGGGACTAG CATGTGTGAT GCACATGCAT ATCAATTCAT GGTGCATAAA TTAATTGGGT
GCCCAAAACA TTCCTTGCAT AAAAAGAAAA AGAAAAGAAA ACTTCAACCA ATTAAATTAT TTGCTGGAAA AAAAAAATGA
ATAAGATAAA GTAGCCTCAA AATAAGGTAC CATAGAGAGA GAAGCAAGAA AGTAAAAAGA AGCTAAGTTA CCATGACAGT
AATAGTTAGT TCAGAAACTA CTGCACCTGT AAGTCCATCA CACTCCCCTC CCTCCATAAG TACCCCCCTT CCCTTCTCAC
TTTCCACTCA CTCTCAAATC AACAAAACCA ACCTACTGCT TCTCTCTCTC CCTCTCTCCC TCTCTCTCTC TCTCTCTTCC
AATGGCTGCC ATTGTTTTCC TCCACATTGC TTCATTGGTT TCTCTTTTTG TTTCAACAAC TGCAAGAATC CCTGGAGTTT
ACACTGGTGG CTCCTGGCAG AGTGCTCATG CCACTTTCTA TGGTGGCAGT GATGCCTCTG GAACAATGGG TGGTGCTTGT
GGGTACGGCA ACCTGTACAG CCAAGGCTAC GGCGTGAGCA CGGCGGCGCT GAGCACGGCA CTGTTCAACA ACGGTTTGAG
CTGCGGCGCG TGCTTTGAGA TCAAGTGCGA CCAGGATCCG CGGTGGTGCA ACCCCGGCAA CCCTTCGATC TTGATCACTG
CCACCAACTT CTGCCCTCCC AACTTCGCTC TTCCCAATGA TAATGGTGGC TGGTGCAACC CTCCTCGCCC ACACTTCGAC
CTTGCCATGC CAATGTTCCT CAAGATCGCC CAGTACCGCG CCGGAATCGT CCCCGTCGCA TATCGCCGGG TGGCATGCAG
AAAGACAGGA GGCATCAGAT TCACAATCAA CGGTTTCCGT TACTTCAACC TGGTGCTGAT CACCAACGTC GCGGGTGCAG
GGGATATCGT GCGCGTGAGT GTTAAAGGAA GCAAAACCGC GTGGATGAGC ATGAGCCGTA ACTGGGGGCA AAATTGGCAA
TCGAACGCGG TTTTGGTGGG CCAGGCCCTC TCCTTTAGGG TTACCGGCAG TGACCGTCGT ACTTCAACCT CCTGGAACGT
GGCACCACCT AATTGGCAGT TCGGACAAAC CTTCACCGGG AAGAATTTCA GGGTTTAAAT GAAAGGGAGA AAGAAAATAA
CTATACCCCT AATATTTTTG AGTTGTTTGT TTGTTTCCGT TTCTCCCCTT CTTCTGACTT TCCTCTATTT ACCCGGAATG
TCTAGGATTA GGGTTAGGAT TAAAAAAGTA AAAATGTAGT TTTAGGAGGA GTAAAAGTGA AAGTAAGGTT ATTTATATTA
TAATAAAATA ATAAAAATAG GTAATATAAA TGTAAGTGGG GGTGTTTGCA TTAAATATGA ATTATTTAAT GTATGGGCAA
TGTTGGAATA TTAATTACCC AACATTAGCA ACCCTTATTT TTCTTTTGTT TTTTTATTTC AAGTGTGAGG GGCTGAGGAG
GTTGCAAGGA GGAACATGTA GCCCGCAGCT CTGGCTTTAA TGTTCACATA AATGTACTAC CATATAATAA ATATAAAATA
AAACAATATT TCAG

>Vigan.04G185300.01
ATGGCTGCCA TTGTTTTCCT CCACATTGCT TCATTGGTTT CTCTTTTTGT TTCAACAACT GCAAGAATCC CTGGAGTTTA
CACTGGTGGC TCCTGGCAGA GTGCTCATGC CACTTTCTAT GGTGGCAGTG ATGCCTCTGG AACAATGGGT GGTGCTTGTG
GGTACGGCAA CCTGTACAGC CAAGGCTACG GCGTGAGCAC GGCGGCGCTG AGCACGGCAC TGTTCAACAA CGGTTTGAGC
TGCGGCGCGT GCTTTGAGAT CAAGTGCGAC CAGGATCCGC GGTGGTGCAA CCCCGGCAAC CCTTCGATCT TGATCACTGC
CACCAACTTC TGCCCTCCCA ACTTCGCTCT TCCCAATGAT AATGGTGGCT GGTGCAACCC TCCTCGCCCA CACTTCGACC
TTGCCATGCC AATGTTCCTC AAGATCGCCC AGTACCGCGC CGGAATCGTC CCCGTCGCAT ATCGCCGGGT GGCATGCAGA
AAGACAGGAG GCATCAGATT CACAATCAAC GGTTTCCGTT ACTTCAACCT GGTGCTGATC ACCAACGTCG CGGGTGCAGG
GGATATCGTG CGCGTGAGTG TTAAAGGAAG CAAAACCGCG TGGATGAGCA TGAGCCGTAA CTGGGGGCAA AATTGGCAAT
CGAACGCGGT TTTGGTGGGC CAGGCCCTCT CCTTTAGGGT TACCGGCAGT GACCGTCGTA CTTCAACCTC CTGGAACGTG
GCACCACCTA ATTGGCAGTT CGGACAAACC TTCACCGGGA AGAATTTCAG GGTTTAA

>Vigan.04G185300.01
MAAIVFLHIA SLVSLFVSTT ARIPGVYTGG SWQSAHATFY GGSDASGTMG GACGYGNLYS QGYGVSTAAL STALFNNGLS
CGACFEIKCD QDPRWCNPGN PSILITATNF CPPNFALPND NGGWCNPPRP HFDLAMPMFL KIAQYRAGIV PVAYRRVACR
KTGGIRFTIN GFRYFNLVLI TNVAGAGDIV RVSVKGSKTA WMSMSRNWGQ NWQSNAVLVG QALSFRVTGS DRRTSTSWNV
APPNWQFGQT FTGKNFRV*