GBrowse Details

Vigan.04G193800.01

Basic Information:
Name: Vigan.04G193800.01
Multiple alignment
Variant Information
Position: Chr04:28301014..28302459 (- strand)
Length: 1446
Functional Information:
Description: Similar to uncharacterized protein. [C6SZP4, Glycine max]
GO: Biological Process: response to stress (GO:0006950)
InterPro: Universal stress protein A (IPR006015)
UspA (IPR006016)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.25,3.46,21.20,90.45,194.34,35.20,210.84,48.64
Arabidopsis thaliana homolog: AT3G53990.1
Automatic updates:
Name: NM_001249356 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527197 (LOC100527197), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:28301014..28301141 (- strand)
Length: 128
Type: three_prime_UTR
Position: Chr04:28301142..28301217 (- strand)
Length: 76
Type: CDS
Position: Chr04:28301547..28301665 (- strand)
Length: 119
Type: CDS
Position: Chr04:28301807..28301916 (- strand)
Length: 110
Type: CDS
Position: Chr04:28302031..28302202 (- strand)
Length: 172
Type: CDS
Position: Chr04:28302203..28302459 (- strand)
Length: 257
Type: five_prime_UTR


>Vigan.04G193800.01
AATGTTATCA TGAGTATAAA CAAGATAATT AAATATATTG TGTTTTTTTA TACATATGTT GTGGTCCTAA AAATGAAAAA
AGCTAATAGA ATAATTTTGG CTGTGACAAC CTGCGGTTCG TTTTGAAAGG CAAGGGATCA TATTCGTGGG CACAATCATT
ATTCAGTTTA GCGTTTTCTT ATTATTACTA TCAAATTCTT CATTATTTAT CTTTGCTCTT CAAACTCACA ACAAGAAAGC
AGAGCAAGAA AGGAAGAATG GTGAAGGACA GAAACATCGG TGTTGCATTG GACTTCTCCA AGAGCAGCAA GGTTGGTCTC
AAATGGGCGA TTGAAAACTT GGCCGATAAA GGCGACACCT TTTACATAAT CCATGTCAAC CACGATTCTT CTGATGATCG
TAACCAGTTG TGGGTCAAAT CTGGTTCTCC TCTTATTCCT TTAAGTGAGT TCAGAGAAGC AGAAGTTCTG AAGAACTATG
GCGTACAAAG TGATGCTGAG GTCCTTGATT TGCTTGACAC TGCCACCAGA CAAAAACAGG TTAACGTTGT TGTAAAATTG
TACTGGGGTG ATGTGAGAGA GAAACTTTTG GATTCCATTG AAGATCTGAA GCTGGACTCT TTGGTCATGG GAAGCAGAGG
TCTCAGCACA ATTCAAAGAA TGATTCTGGG AAGTGTAAGC AACTTTGTGA TGACTCATGC TCCATGCCCA GTGACCATTG
TGAAGGAGCA TTAGTGTGCA GATGATAGTT TTGGGAGAAC ATTTACCTCT TTGATGATGT TTTTTCATCC ATTGTACTCT
CCACTCTACT ATATATATTA TGTAATGTAA TTTTACATCT ATACTGTCTT AGAACTTGTT CA

>Vigan.04G193800.01
ATGGTGAAGG ACAGAAACAT CGGTGTTGCA TTGGACTTCT CCAAGAGCAG CAAGGTTGGT CTCAAATGGG CGATTGAAAA
CTTGGCCGAT AAAGGCGACA CCTTTTACAT AATCCATGTC AACCACGATT CTTCTGATGA TCGTAACCAG TTGTGGGTCA
AATCTGGTTC TCCTCTTATT CCTTTAAGTG AGTTCAGAGA AGCAGAAGTT CTGAAGAACT ATGGCGTACA AAGTGATGCT
GAGGTCCTTG ATTTGCTTGA CACTGCCACC AGACAAAAAC AGGTTAACGT TGTTGTAAAA TTGTACTGGG GTGATGTGAG
AGAGAAACTT TTGGATTCCA TTGAAGATCT GAAGCTGGAC TCTTTGGTCA TGGGAAGCAG AGGTCTCAGC ACAATTCAAA
GAATGATTCT GGGAAGTGTA AGCAACTTTG TGATGACTCA TGCTCCATGC CCAGTGACCA TTGTGAAGGA GCATTAG

>Vigan.04G193800.01
MVKDRNIGVA LDFSKSSKVG LKWAIENLAD KGDTFYIIHV NHDSSDDRNQ LWVKSGSPLI PLSEFREAEV LKNYGVQSDA
EVLDLLDTAT RQKQVNVVVK LYWGDVREKL LDSIEDLKLD SLVMGSRGLS TIQRMILGSV SNFVMTHAPC PVTIVKEH*