GBrowse Details

Vigan.04G197500.01

Basic Information:
Name: Vigan.04G197500.01
Multiple alignment
Variant Information
Position: Chr04:28874526..28881035 (+ strand)
Length: 6510
Functional Information:
Description: Similar to elongator complex protein 6-like. [XP_004492218.1, Cicer arietinum]
InterPro: Uncharacterised protein family UPF0405 (IPR018627)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.73,7.01,4.00,5.03,6.42,4.59,4.11,4.24
Arabidopsis thaliana homolog: AT4G10090.1
Automatic updates:
Name: NM_001252780 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0405 protein C3orf75 homolog (LOC100797712), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:28874526..28875078 (+ strand)
Length: 553
Type: five_prime_UTR
Position: Chr04:28875079..28875318 (+ strand)
Length: 240
Type: CDS
Position: Chr04:28876207..28876279 (+ strand)
Length: 73
Type: CDS
Position: Chr04:28878650..28878846 (+ strand)
Length: 197
Type: CDS
Position: Chr04:28878925..28879071 (+ strand)
Length: 147
Type: CDS
Position: Chr04:28880551..28880676 (+ strand)
Length: 126
Type: CDS
Position: Chr04:28880677..28881035 (+ strand)
Length: 359
Type: three_prime_UTR


>Vigan.04G197500.01
TTTTGTTTCA ATGAGTCCGA CACGATAGTG AATGAAATTT CCGAAGCATG GGTTTTTAAT TCGAATACGA GATTCGCAGC
AGTGAAAGTA GTACTCTGCA ATGACTACTT CGACACTTTT CGGAATAACC ACTCCGGAAA TCTTACCGCG GTACCGCGTC
AGGTTCACCC ACGTGGGCGT TAGCCGGGAG CAAGGGAAGT TGAGCTGATT GCCATCGACG ACCGGGGGTA TTATGGCAAC
GACAGATCGA CTGCGGAGAT GCAACACACT GTTTACAGCG GCACATGGTT TACGGCAGCC GCAGTGAAGG AGAATGGGGG
AAGAATAGGT CAGGTGGTAA AAACGAACTC AAAGGGATTT TTGTCTTTTT AATTTTGCTA CGGGGTTGCC GGTTGCAATT
AAGGTGGTGC AGGACGCAAA AGTCCTAACT AATGGTTCGG GTTTTTGGGC CGAGAAAACG AGAAGAAAAA AACCGTTGAT
TATTCGGGTC ATGCCGGACG CAGTCGGATT GGAAGTTTCA TAAACGGTGA CCTGAAAGCA GAAGAAGCAG AAGATGGAGC
AGAAAAATTG GAACCTTCTG GACGAATCGC TGGGGCTTCA CATTAATGAC GACGCGAAGC CATGGCCTCT GTGTGGTCGC
TTCGTGCTTG TGGAGGACTG TGTTGACACA AGCGCCGCTT TCGTTCTTCA CCACATCCTC AAACGCTCCT TCTCTTCTCA
CCCTTCTTCC GCCGTTCTCT TCCTCGCTTT TTCTCATCCT TTCTCCCACT ACGATCGCGT CCTCCGAAAG CTCGGTTGCA
ACTTAACTGC TCAAAGAGAT AATGGCAGAT TCTTTTTCCT TCCTATGCTT ATGTTTCAGT GTCCAGGGGA AGGAAAACCC
AATCATGATG GGCTTGCTTC TGTGTTTGAG CAAATTGAAA GAGTGATCAC TCTGTTACAT CAAGACAAGA AATCCATCTC
TATCATTATA GATGATATAT CTTTTCTTGA AGTTGCTGCT AATGGTTCTT CAGATGATGT TTTAAACTTG CTGCATTATT
GCCATACGTT AACATCAGAA TATGGTTGTG CATTGATTGC ACTTGATCAT AAAGATATTT ATTTGAATGG AGACAGGACT
GCTGTTATCT TAGAGATGGA GTACCGTGCT GACATTTTGG TCAAGGCTGA ACCATTGGCC ACTGGTTTAG CAAAAGATGT
GCATGGTCAG TTGATGGTGT TAAATAAGGA AACACAACAT CAGCATGGAA TTACAGCCAT TAAGAGTTAC AATTTTCACT
TCAAGATCAA GGAAAATGGC ATCGAGTGCT TTTATCCTGG TACAAAAATC CAATGATGAT CAATGATTCT TGATAGGTAC
AATACTTAAT CGATTGTGAG ATGATAGAAT CCAATGCGAT TATACTTGAA TTGGTGATTG ACACACTTAG AGTTATTGGT
TTTATTTGTG CATCACTGAT TGGTGTCAAT GATTTTTTTC ACTTGATCGT GTATTATGAG TAATGAAAGC CTTGGAGCAG
TAAATTTTAG CCATACATTC AAAATGGATG CATAAGGTTA GATTTAAATA AAATAATATT AATTATTTGC ATAGTTTTAA
GACGAAGATT AACTTATCTC CTGCTTTCAT TAGATACGTG AAAAAGATTC AGTTAAATTT ATTATGAAGG GAAATGTGGA
GAGCATGAGT TGAAT

>Vigan.04G197500.01
ATGGAGCAGA AAAATTGGAA CCTTCTGGAC GAATCGCTGG GGCTTCACAT TAATGACGAC GCGAAGCCAT GGCCTCTGTG
TGGTCGCTTC GTGCTTGTGG AGGACTGTGT TGACACAAGC GCCGCTTTCG TTCTTCACCA CATCCTCAAA CGCTCCTTCT
CTTCTCACCC TTCTTCCGCC GTTCTCTTCC TCGCTTTTTC TCATCCTTTC TCCCACTACG ATCGCGTCCT CCGAAAGCTC
GGTTGCAACT TAACTGCTCA AAGAGATAAT GGCAGATTCT TTTTCCTTCC TATGCTTATG TTTCAGTGTC CAGGGGAAGG
AAAACCCAAT CATGATGGGC TTGCTTCTGT GTTTGAGCAA ATTGAAAGAG TGATCACTCT GTTACATCAA GACAAGAAAT
CCATCTCTAT CATTATAGAT GATATATCTT TTCTTGAAGT TGCTGCTAAT GGTTCTTCAG ATGATGTTTT AAACTTGCTG
CATTATTGCC ATACGTTAAC ATCAGAATAT GGTTGTGCAT TGATTGCACT TGATCATAAA GATATTTATT TGAATGGAGA
CAGGACTGCT GTTATCTTAG AGATGGAGTA CCGTGCTGAC ATTTTGGTCA AGGCTGAACC ATTGGCCACT GGTTTAGCAA
AAGATGTGCA TGGTCAGTTG ATGGTGTTAA ATAAGGAAAC ACAACATCAG CATGGAATTA CAGCCATTAA GAGTTACAAT
TTTCACTTCA AGATCAAGGA AAATGGCATC GAGTGCTTTT ATCCTGGTAC AAAAATCCAA TGA

>Vigan.04G197500.01
MEQKNWNLLD ESLGLHINDD AKPWPLCGRF VLVEDCVDTS AAFVLHHILK RSFSSHPSSA VLFLAFSHPF SHYDRVLRKL
GCNLTAQRDN GRFFFLPMLM FQCPGEGKPN HDGLASVFEQ IERVITLLHQ DKKSISIIID DISFLEVAAN GSSDDVLNLL
HYCHTLTSEY GCALIALDHK DIYLNGDRTA VILEMEYRAD ILVKAEPLAT GLAKDVHGQL MVLNKETQHQ HGITAIKSYN
FHFKIKENGI ECFYPGTKIQ *