VIGGS:GBrowse

Vigan.04G202600.01

Basic Information:

Name:	Vigan.04G202600.01 Multiple alignment Variant Information
Position:	Chr04:29540580..29541482 (+ strand)
Length:	903

Functional Information:

Description:	Similar to Uncharacterized protein. [C7S8D4, Glycine max]
GO:	Molecular Function: manganese ion binding (GO:0030145)
GO:	Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro:	Germin (IPR001929)
	Cupin 1 (IPR006045)
	RmlC-like cupin domain (IPR011051)
	RmlC-like jelly roll fold (IPR014710)
	Germin, manganese binding site (IPR019780)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.00,0.77,0.00,2.44,0.43,29.85,0.00

Automatic updates:

Name:	NM_001251744 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527866 (LOC100527866), mRNA.
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001254390 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max germin-like protein (GER14), mRNA.
PubMed ID:	25360675 NCBI(pubmed)
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001358039 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max germin-like protein (GER13), mRNA.
PubMed ID:	25360675 NCBI(pubmed)
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:29540580..29540604 (+ strand)
Length:	25
Type:	five_prime_UTR

Position:	Chr04:29540605..29540722 (+ strand)
Length:	118
Type:	CDS

Position:	Chr04:29540811..29541361 (+ strand)
Length:	551
Type:	CDS

Position:	Chr04:29541362..29541482 (+ strand)
Length:	121
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G202600.01
TAGAGAAATA GAGTGCAGAA GCAAAATGAA AAGTGTGTAT TTCCTTGTGA CAATCTTGGC TTTAACGTCG TCCATTGCCT
CAGCCTATGA TCCAAGCCCT CTGCAAGATT TTTGTGTGGC TTTGAATGAC ACAAAGAATG CTGTATTTGT GAACGGAAAA
GTTTGCAAAG ACCCTAAAGC AGTGAAAGCA GAAGATTTCT TCAGACACGT GGAAGCTGGG AATACATCGA ACCCACTTGG
AGCACAAGTG AGTCAAGTGT TTGTTGATGA GCTAGCAGGA TTGAACACAC TTGGCATATC TATGGCTCGT ATAGATTTTG
CAGCAAAGGG TTTAAACGCT CCCCACACTC ACCCTCGGGC CACAGAGATC CTTACTGTTG TTGAGGGAAC TCTTTATGTT
GGATTTGTGA GTTCCAATCA AGATGGCAAC CGTCTCTTTA CCAAAGTTTT GAACAAGGGT GATGTCTTTG TCTTCCCAAT
TGGTCTCATT CATTTCCAAC TTAATGTCGG CTATGGCAAT GCTGTTGCCG TCGCTTCTCT CAGCAGTCAA AATCCAGGAA
CTATCACTAT TGCCAACGCT TTGTTTAAGT CCAATCCTTC TATTTCTTCT CAGGTTCTTA CCAAAGCCTT CCAAGTTGAT
AAGAGCGTAA TCGATTACCT TCAAAAGCAA TTCTGGACTG ACAACAACCA CTAGTTCATT ATTCATTCAC TGTATTCATT
TCCTCTTTCT ACCCATATAT AATTTCTTTA TGCAATAAAT AAAAATTCTT CCCACTTATA TTTGTATGTT GTTTCTGCTT
TATTTGGAGT TCGAT

[show][hide][copy]CDS

>Vigan.04G202600.01
ATGAAAAGTG TGTATTTCCT TGTGACAATC TTGGCTTTAA CGTCGTCCAT TGCCTCAGCC TATGATCCAA GCCCTCTGCA
AGATTTTTGT GTGGCTTTGA ATGACACAAA GAATGCTGTA TTTGTGAACG GAAAAGTTTG CAAAGACCCT AAAGCAGTGA
AAGCAGAAGA TTTCTTCAGA CACGTGGAAG CTGGGAATAC ATCGAACCCA CTTGGAGCAC AAGTGAGTCA AGTGTTTGTT
GATGAGCTAG CAGGATTGAA CACACTTGGC ATATCTATGG CTCGTATAGA TTTTGCAGCA AAGGGTTTAA ACGCTCCCCA
CACTCACCCT CGGGCCACAG AGATCCTTAC TGTTGTTGAG GGAACTCTTT ATGTTGGATT TGTGAGTTCC AATCAAGATG
GCAACCGTCT CTTTACCAAA GTTTTGAACA AGGGTGATGT CTTTGTCTTC CCAATTGGTC TCATTCATTT CCAACTTAAT
GTCGGCTATG GCAATGCTGT TGCCGTCGCT TCTCTCAGCA GTCAAAATCC AGGAACTATC ACTATTGCCA ACGCTTTGTT
TAAGTCCAAT CCTTCTATTT CTTCTCAGGT TCTTACCAAA GCCTTCCAAG TTGATAAGAG CGTAATCGAT TACCTTCAAA
AGCAATTCTG GACTGACAAC AACCACTAG

[show][hide][copy]PROTEIN

>Vigan.04G202600.01
MKSVYFLVTI LALTSSIASA YDPSPLQDFC VALNDTKNAV FVNGKVCKDP KAVKAEDFFR HVEAGNTSNP LGAQVSQVFV
DELAGLNTLG ISMARIDFAA KGLNAPHTHP RATEILTVVE GTLYVGFVSS NQDGNRLFTK VLNKGDVFVF PIGLIHFQLN
VGYGNAVAVA SLSSQNPGTI TIANALFKSN PSISSQVLTK AFQVDKSVID YLQKQFWTDN NH*