GBrowse Details

Vigan.04G203900.01

Basic Information:
Name: Vigan.04G203900.01
Multiple alignment
Variant Information
Position: Chr04:29678252..29695763 (- strand)
Length: 17512
Functional Information:
Description: Similar to Uncharacterized protein. [I1MLV4, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.84,19.06,3.62,5.01,6.61,5.90,5.03,3.54
Arabidopsis thaliana homolog: AT5G14530.1
Automatic updates:
Name: NM_001254182 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WD repeat-containing protein 82-like (LOC100776353), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:29678252..29678526 (- strand)
Length: 275
Type: three_prime_UTR
Position: Chr04:29678527..29678823 (- strand)
Length: 297
Type: CDS
Position: Chr04:29689585..29689634 (- strand)
Length: 50
Type: CDS
Position: Chr04:29692115..29692196 (- strand)
Length: 82
Type: CDS
Position: Chr04:29692298..29692435 (- strand)
Length: 138
Type: CDS
Position: Chr04:29692520..29692636 (- strand)
Length: 117
Type: CDS
Position: Chr04:29693007..29693106 (- strand)
Length: 100
Type: CDS
Position: Chr04:29693604..29693670 (- strand)
Length: 67
Type: CDS
Position: Chr04:29693768..29693877 (- strand)
Length: 110
Type: CDS
Position: Chr04:29695051..29695151 (- strand)
Length: 101
Type: CDS
Position: Chr04:29695557..29695631 (- strand)
Length: 75
Type: CDS
Position: Chr04:29695632..29695763 (- strand)
Length: 132
Type: five_prime_UTR


>Vigan.04G203900.01
GAAGTTACTA ATAAATAGTG GAGGAATATC CCAACCTGTC CCACCACCAG TTAAAGAACT GTGAAAAAGA GACGACGGAT
TGTTCTGCCG TGTTACTGCC CTTTCACACT GTTGATACTT TGCTCGGCGA AGATGACGTC GTCGCTTACG GAGCTTGACG
ATGATTTGGT TCGCTGCATG TCCATAGGAG CCGTCTTCTC CGAATTCGGT GGGAAGATAC ATTCCATTGA TTTCCATCGA
AAGGATGATT TACTTGTCAC GGCAAGTGAG GATGACTCAG TTCGACTTTA TGACATCGCT AATGCCAAGT TGCTGAAGAC
TACTTCTCAT AAGAAACATG GTACAGATAG GATATGCTTT ACTCATCATC CAAGCTCTGT TATATGCTCT TCAAAATACA
ATTTGGAGTC TACTGGAGAA TCATTGCGAT ACTTATCAAT GTATGATAAC CGATGCATAA GATACTTCAA AGGGCACACA
CAGAGGGTTG TTTCTCTTTG CATGTCTCCA ATCAATGATA GCTTCATGTC TGGTTCTCTA GACCACAGTG TCAGGATATG
GGATCTTCGA GTAAATGCTT GCCAGGGCAT CTTACGTCTA CGTGGTAGAC CTGCTGTGGC ATATGACCAA CAAGGCCTTG
TCTTTGCTGT AGCAATGGAA GGGGGGGCTA TTAAATTATT CGATTCTCGT TCTTATGACA AGGGTCCATT TGACACCTTT
CTAGTTGGTG GTGACACAGC TGAAGTTTGT GATATCAAAT TCAGTAATGA TGGCAAATCA ATGCTTTTAA CTACTACTAA
TAACAATATT TATATTCTTG ATGCATATGG AGGAGAAAAG CGTTGTGGGT TTAGTTTGGA AGCATCTCCT GGTACTCCTA
TAGAGGCTAC TTTTACCCCA GATGGGAAAT ACATGGTGGC AGGCTCAGGA GGTGGAACCA TGCATGCTTG GAGTATTCAG
ACGAAGAATG AGGTTAAGAA CGGGTTCAAA TTCCAACCCA CTAAAAGTCG TAGGGTTGTC TATCCTTGCT CACGTACACA
CACGAGACTA ACGTTGAGGT CCTGCCACCG CGCCAGATAC GTTGATGACA TAAGAGTCGT CGCCGTGAGT AGCCACCGAG
GGACGCATTG TTGTCGCAAT GTCTTTCGGC TTCTTCTCGC TCATCACTGG AGGAATTGCA CCGCTAGGCA GCGAGAGGGG
TCACCGCGAG AGGCGCCGTC GCGAGAGTCG CTACAGCAAG AGAGCCGTGA GAGGTGCCAC AACGAGTAGC ATCTCTACCA
ATGAATGCTA CGATTCGGGG CGATTCATGC AATTTGGAGA TCGAATCGTA CTATACGAAC ACGATACAGG AGCCAAAACG
AGTCTTCAAG CGATTCGTAT CGTGTAGGTG AAGATTCGTA TCGTATAGTA TCATATTATA CTTACTACCA TGAGTGTAAA
GTCAAAGGAC AAAACTAGAG TTCTAAATTC AATTCATAAG TAGAACACAT AGCAATGTTC CAATAAAAAG TAGACGAGAA
AATAAAATGA GCTTAAATTA AGAG

>Vigan.04G203900.01
ATGACGTCGT CGCTTACGGA GCTTGACGAT GATTTGGTTC GCTGCATGTC CATAGGAGCC GTCTTCTCCG AATTCGGTGG
GAAGATACAT TCCATTGATT TCCATCGAAA GGATGATTTA CTTGTCACGG CAAGTGAGGA TGACTCAGTT CGACTTTATG
ACATCGCTAA TGCCAAGTTG CTGAAGACTA CTTCTCATAA GAAACATGGT ACAGATAGGA TATGCTTTAC TCATCATCCA
AGCTCTGTTA TATGCTCTTC AAAATACAAT TTGGAGTCTA CTGGAGAATC ATTGCGATAC TTATCAATGT ATGATAACCG
ATGCATAAGA TACTTCAAAG GGCACACACA GAGGGTTGTT TCTCTTTGCA TGTCTCCAAT CAATGATAGC TTCATGTCTG
GTTCTCTAGA CCACAGTGTC AGGATATGGG ATCTTCGAGT AAATGCTTGC CAGGGCATCT TACGTCTACG TGGTAGACCT
GCTGTGGCAT ATGACCAACA AGGCCTTGTC TTTGCTGTAG CAATGGAAGG GGGGGCTATT AAATTATTCG ATTCTCGTTC
TTATGACAAG GGTCCATTTG ACACCTTTCT AGTTGGTGGT GACACAGCTG AAGTTTGTGA TATCAAATTC AGTAATGATG
GCAAATCAAT GCTTTTAACT ACTACTAATA ACAATATTTA TATTCTTGAT GCATATGGAG GAGAAAAGCG TTGTGGGTTT
AGTTTGGAAG CATCTCCTGG TACTCCTATA GAGGCTACTT TTACCCCAGA TGGGAAATAC ATGGTGGCAG GCTCAGGAGG
TGGAACCATG CATGCTTGGA GTATTCAGAC GAAGAATGAG GTTAAGAACG GGTTCAAATT CCAACCCACT AAAAGTCGTA
GGGTTGTCTA TCCTTGCTCA CGTACACACA CGAGACTAAC GTTGAGGTCC TGCCACCGCG CCAGATACGT TGATGACATA
AGAGTCGTCG CCGTGAGTAG CCACCGAGGG ACGCATTGTT GTCGCAATGT CTTTCGGCTT CTTCTCGCTC ATCACTGGAG
GAATTGCACC GCTAGGCAGC GAGAGGGGTC ACCGCGAGAG GCGCCGTCGC GAGAGTCGCT ACAGCAAGAG AGCCGTGAGA
GGTGCCACAA CGAGTAG

>Vigan.04G203900.01
MTSSLTELDD DLVRCMSIGA VFSEFGGKIH SIDFHRKDDL LVTASEDDSV RLYDIANAKL LKTTSHKKHG TDRICFTHHP
SSVICSSKYN LESTGESLRY LSMYDNRCIR YFKGHTQRVV SLCMSPINDS FMSGSLDHSV RIWDLRVNAC QGILRLRGRP
AVAYDQQGLV FAVAMEGGAI KLFDSRSYDK GPFDTFLVGG DTAEVCDIKF SNDGKSMLLT TTNNNIYILD AYGGEKRCGF
SLEASPGTPI EATFTPDGKY MVAGSGGGTM HAWSIQTKNE VKNGFKFQPT KSRRVVYPCS RTHTRLTLRS CHRARYVDDI
RVVAVSSHRG THCCRNVFRL LLAHHWRNCT ARQREGSPRE APSRESLQQE SRERCHNE*