GBrowse Details

Vigan.04G210100.01

Basic Information:
Name: Vigan.04G210100.01
Multiple alignment
Variant Information
Position: Chr04:30485601..30489251 (+ strand)
Length: 3651
Functional Information:
Description: Similar to quinone oxidoreductase-like protein At1g23740, chloroplastic-like. [XP_004515401.1, Cicer arietinum]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Quinone oxidoreductase/zeta-crystallin, conserved site (IPR002364)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,1.56,95.02,92.50,105.34,225.97,109.11,157.00
Automatic updates:
Name: NM_001255054 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max quinone oxidoreductase-like protein At1g23740, chloroplastic-like (LOC100817947), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:30485601..30485694 (+ strand)
Length: 94
Type: five_prime_UTR
Position: Chr04:30485695..30485904 (+ strand)
Length: 210
Type: CDS
Position: Chr04:30487694..30488017 (+ strand)
Length: 324
Type: CDS
Position: Chr04:30488234..30488393 (+ strand)
Length: 160
Type: CDS
Position: Chr04:30488491..30488756 (+ strand)
Length: 266
Type: CDS
Position: Chr04:30488757..30489251 (+ strand)
Length: 495
Type: three_prime_UTR


>Vigan.04G210100.01
TTCTTTAAAC CACTTTCCCT TTGCATTCAC TCTGCATCTG ACTCTGCATC TGACTCCTAC TTTCCTTCAT TGTTGTTCGA
GCAGCAGAAG GAGAATGGCT GCAACATCAG TGCCTTCTCA CATGAAAGCT TGGACTTACT CGGAGTATGG CAAATCCGGC
GAAGTTCTCA AGTTTAACAG CAGCGTGGCT TTACCTCCGG TGAAGGAAGA TCAGGTCCTC ATCAAGGTCG CTGCTGCTTC
CATTAACCCC ATTGATTACA AGAGAATGGA AGGTCATTTC AAGAACTCCG ATTCCCCTTT ACCCACTGTT CCGGGATTTG
ATGTTGCTGG AGTGGTGGTC AAAGTGGGAA GTGAAGTGAA GAAATTCAAG GTTGGCGATG AAGTCTACGG TGATATCAAT
TTGAAAGCTT TGGAATATCC GAAGGTGATT GGTTCTTTGG CAGAATACAC TGCTGCAGAA GAGAGACTAT TGGCTCACAA
GCCACAGAGT CTGAGCTTTG TTGAGGCTGC TAGCCTTCCT TTAACACTTG AGACAGCTTA TGAAGGCCTC GAACGAACTG
GGTTCTCTGC AGGTAAATCT ATCCTTGTGC TTGGAGGTGC CGGTGGAGTT GGAACCCATG TTATTCAGCT TGCAAAGCAT
GTATATGGAG CATCCAAGGT AGCAGCCACA GCTAGCACCA GAAAATTGGA GTTATTGAGC AATTTGGGGG CTGACTTGCC
AATTGATTAT ACTAAAGAGA ATTTTGAAGA CTTGTCTGAA AAGTTTGATG TGGTGTATGA TACAGTAGGG CAAACTGAAC
TGGCATTCAA GGCCTTGAAA GAAGGAGGCA AAGTTGTGAC CATAGTACCA CCTGGGTTTC CTCCAGCTAT ATTGTTCATT
CTCAGTACTG ATGGGGGTAT TTTAGAGAAA CTAAACCCCT ATTTTGAGAG TGGTAAGTTG AAGCCAATAC TTGACCCCAA
GAGCCCCTTT CCATTTTCTC AGGCTGTTGA AGCATTTGCC CATCTGGAAA CAAACAGGGC AACTGGAAAA GTTGTTATCT
ATCCCATTCC ATGAACATGA GCTTCTTTGT TAAAATCTAT GGTGCTCTCT ACGATCCAAA GTTTGTGTTA TAACAGTGAG
AAACAGTGAT AAATGTTCTC CATAACTTGA AGCTACGTTG TTTCTTTGAA GACCATGTGT TGTAGAATAA GCAGAATTAT
GTCTTACAGG CATTGGCGTG GCTGCAACTG AGCCTTCAAC ATAGTGTGGC TTGTAATTTC CTTTTGGGTA CGTATTGTGG
TTTGCAGTTT TGGCTAATGA AATAATCAAA TGGTTTTTAA TATTTAGCTC TACTTTACGC TGCATTTTAT GGTAATTTTG
GGAGACAAAA ACTTTAATTA CAATCTAGTT TCATCTAAAC TTTCTCTTAC ATATTCATGT TTGCTAAAAC ATTGATGGCT
TCATAAGTGA AGGCCTAATT GTGGTGAACT TTTAGGAAAA TTGCATATTT AGTTCTAGTG AATAATGTGT CGTTGTTGAT
CGATGCTCCC TATGAAAGTT TCTTTCTGG

>Vigan.04G210100.01
ATGGCTGCAA CATCAGTGCC TTCTCACATG AAAGCTTGGA CTTACTCGGA GTATGGCAAA TCCGGCGAAG TTCTCAAGTT
TAACAGCAGC GTGGCTTTAC CTCCGGTGAA GGAAGATCAG GTCCTCATCA AGGTCGCTGC TGCTTCCATT AACCCCATTG
ATTACAAGAG AATGGAAGGT CATTTCAAGA ACTCCGATTC CCCTTTACCC ACTGTTCCGG GATTTGATGT TGCTGGAGTG
GTGGTCAAAG TGGGAAGTGA AGTGAAGAAA TTCAAGGTTG GCGATGAAGT CTACGGTGAT ATCAATTTGA AAGCTTTGGA
ATATCCGAAG GTGATTGGTT CTTTGGCAGA ATACACTGCT GCAGAAGAGA GACTATTGGC TCACAAGCCA CAGAGTCTGA
GCTTTGTTGA GGCTGCTAGC CTTCCTTTAA CACTTGAGAC AGCTTATGAA GGCCTCGAAC GAACTGGGTT CTCTGCAGGT
AAATCTATCC TTGTGCTTGG AGGTGCCGGT GGAGTTGGAA CCCATGTTAT TCAGCTTGCA AAGCATGTAT ATGGAGCATC
CAAGGTAGCA GCCACAGCTA GCACCAGAAA ATTGGAGTTA TTGAGCAATT TGGGGGCTGA CTTGCCAATT GATTATACTA
AAGAGAATTT TGAAGACTTG TCTGAAAAGT TTGATGTGGT GTATGATACA GTAGGGCAAA CTGAACTGGC ATTCAAGGCC
TTGAAAGAAG GAGGCAAAGT TGTGACCATA GTACCACCTG GGTTTCCTCC AGCTATATTG TTCATTCTCA GTACTGATGG
GGGTATTTTA GAGAAACTAA ACCCCTATTT TGAGAGTGGT AAGTTGAAGC CAATACTTGA CCCCAAGAGC CCCTTTCCAT
TTTCTCAGGC TGTTGAAGCA TTTGCCCATC TGGAAACAAA CAGGGCAACT GGAAAAGTTG TTATCTATCC CATTCCATGA


>Vigan.04G210100.01
MAATSVPSHM KAWTYSEYGK SGEVLKFNSS VALPPVKEDQ VLIKVAAASI NPIDYKRMEG HFKNSDSPLP TVPGFDVAGV
VVKVGSEVKK FKVGDEVYGD INLKALEYPK VIGSLAEYTA AEERLLAHKP QSLSFVEAAS LPLTLETAYE GLERTGFSAG
KSILVLGGAG GVGTHVIQLA KHVYGASKVA ATASTRKLEL LSNLGADLPI DYTKENFEDL SEKFDVVYDT VGQTELAFKA
LKEGGKVVTI VPPGFPPAIL FILSTDGGIL EKLNPYFESG KLKPILDPKS PFPFSQAVEA FAHLETNRAT GKVVIYPIP*