GBrowse Details

Vigan.04G214200.01

Basic Information:
Name: Vigan.04G214200.01
Multiple alignment
Variant Information
Position: Chr04:31385000..31389795 (- strand)
Length: 4796
Functional Information:
Description: Similar to Uncharacterized protein. [E2GK54, Glycine max]
InterPro: Carotenoid oxygenase (IPR004294)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.55,0.11,0.00,0.31,1.50,2.27,3.34
Arabidopsis thaliana homolog: AT2G44990.1
Automatic updates:
Name: NM_001254238 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carotenoid cleavage dioxygenase 7 (CCD7), mRNA.
PubMed ID: 29268717 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:31385000..31385176 (- strand)
Length: 177
Type: three_prime_UTR
Position: Chr04:31385177..31385320 (- strand)
Length: 144
Type: CDS
Position: Chr04:31385898..31386212 (- strand)
Length: 315
Type: CDS
Position: Chr04:31387029..31387111 (- strand)
Length: 83
Type: CDS
Position: Chr04:31387260..31387535 (- strand)
Length: 276
Type: CDS
Position: Chr04:31387810..31387941 (- strand)
Length: 132
Type: CDS
Position: Chr04:31388054..31388182 (- strand)
Length: 129
Type: CDS
Position: Chr04:31389010..31389772 (- strand)
Length: 763
Type: CDS
Position: Chr04:31389773..31389795 (- strand)
Length: 23
Type: five_prime_UTR


>Vigan.04G214200.01
CAAAGCCATA GTCACTCCCA AAGATGCAGA CCAAACCCAT CCACAACACC CCAACATACA TTCCTCCACC CATTAGGCCA
TCGCCTCCGG TGCACCAAAC CCCCTCCTCC ACACCACCGA CCAAACCCCG TGCAATATCC ATTTCCACAC CCAATATTCC
GGTTGCCATA CCAATTCCAC CAACTATTGA ACCTGATGAC TCCATAGCCG CATACTATGA CTACCAATTC TTGTTCATGT
CACAAAGATC CGAAGCAACT CGACCCATTA CTCTGAGCAC CGTGGAAGGT GTGATCCCGG TCGATTTCCC CACCGGCACG
TACTACCTAA CCGGACCGGG GCTTTTGACC GATGACCACG GCTCCACGGT TCATCCTTTG GATGGGCATG GTTACTTAAG
AGCATTCACC TTTGATAATG TTACTAAGAA TGTGAAATAC ATGGCTAAGT ACATTAGAAC GGAAGCACAT GTAGAGGAAC
ATGACCCCGA GACCAAGAAG TGGAAATTCA CACATAGAGG ACCATTTTCG GTGTTGAAGG GTGGAAAAAA GGTAGGGAAC
ACTAAGGTCA TGAAAAATGT GGCTAACACT AGTGTACTAA AGTGGGGAGG GAAACTCCTG TGCATGTGGG AAGGTGGGGA
ACCGTATGAG ATCCAAGCTG GTACGTTGGA TACGATTGGA CAATACAACA TCATGGATGC TGTTGATTTG GAAGATCATC
ATGATGAGAG TAGAGGTGGT GATGTTTGGG AGGTGGCTGC CAACATACTG AAGCCTATAT TATATGGAGT GTTTAAGATG
CCCCCAAGGA GACTCTTGTC TCACTACAAG GTTGATTCTA GAAGAGACAG GCTACTCACT GTGTCATGCA ATGCAGAAGA
CATGTTGCTT CCACGCAGTA ATTTTACATT TACGGAGTAC GACTCAAATT TCAAAGTAGT GCAGAAGCAA AATTTCAGAA
TCCCAGATCA CTTGATGATC CATGATTGGG CTTTCACAGA TACCCACTAC ATAGTGTTTG CCAATCGCAT AAAACTCGAT
GTACTAGGAT CAATGGCAGC AGTGTATGGG ATGTCTCCAA TGATATCAGC ATTAAGAGTT AACCCAAGTA AGAGCACATC
TCCTATATAC CTGATTCCAA GGTTTCCAGA GAAGCAAAAG GGCAAGGAGA GAGATTGGAG AGTACCAGTT GAAGCACCTT
CACAGTTGTG GTTGCTTCAT GTTGGCAATG CCTTTGAAGT TAGACATCAA CATGGGAATT TGGACATCCA AATACAAGCT
GCTGCTTGCT CTTACCAATG GTTCAATTTC AGCAAATTAT TTGGATACGA CTGGCAAAAG AGGAAGCTAG ACCCTGCAAT
AATGAATGTC AAAGGTGGAA CTGAGTTATT GCCTCATCTT GTTCAGGTAT CTATAAAATT AGATTCAGAC TACAATTGCC
AAGAATGTAA TGTGAAGCCC ATGAAGAAAT GGAAGAAATC CTCAGATTTT CCGACGACCA ACCCAGCATT TTCCGGGAAG
AAAAACAAAT ATCTGTACGC AGCAACAACT TTAGGATCTC GAAAAACATT ACCATGTTTC CCTTTCGACA CTGTAGTGAA
ACTAGATCTA GACAATGATT CTGCACAAAC TTGGAGTGCT GGAAGAAGAA GATTCATTGG TGAACCCATT TTTGTTCCCA
AAGGTGACGG AGAAGATGAT GGCTATCTTC TTGTCGTTGA GTATGCTGTT TCAATGAATA GATGCTACCT CGTCATCTTG
AACCCAAAAA GGATAGGATC AGATAATGCC CTTGTTGCCA GGATCGAAAT TCCAAGTCAC TTAAATTTCC CTCTGGGTTT
TCATGGTTTC TGGGCAGCTA ATTAGATAAA ACCCTAATTA CGTTATTACA AATTTTCTTT TTATATTGAA AATTCAGAAA
TTATATTCAA TATTGATGCA ATTGATTGTA TAGTTTCATG ATACGATTAT TTATTAATAC GTAGTTGTAA GGTTTTATCT
AAAGTGAGCT AGCCATGTAA AGTTGTTAGC AATCAATAAA AT

>Vigan.04G214200.01
ATGCAGACCA AACCCATCCA CAACACCCCA ACATACATTC CTCCACCCAT TAGGCCATCG CCTCCGGTGC ACCAAACCCC
CTCCTCCACA CCACCGACCA AACCCCGTGC AATATCCATT TCCACACCCA ATATTCCGGT TGCCATACCA ATTCCACCAA
CTATTGAACC TGATGACTCC ATAGCCGCAT ACTATGACTA CCAATTCTTG TTCATGTCAC AAAGATCCGA AGCAACTCGA
CCCATTACTC TGAGCACCGT GGAAGGTGTG ATCCCGGTCG ATTTCCCCAC CGGCACGTAC TACCTAACCG GACCGGGGCT
TTTGACCGAT GACCACGGCT CCACGGTTCA TCCTTTGGAT GGGCATGGTT ACTTAAGAGC ATTCACCTTT GATAATGTTA
CTAAGAATGT GAAATACATG GCTAAGTACA TTAGAACGGA AGCACATGTA GAGGAACATG ACCCCGAGAC CAAGAAGTGG
AAATTCACAC ATAGAGGACC ATTTTCGGTG TTGAAGGGTG GAAAAAAGGT AGGGAACACT AAGGTCATGA AAAATGTGGC
TAACACTAGT GTACTAAAGT GGGGAGGGAA ACTCCTGTGC ATGTGGGAAG GTGGGGAACC GTATGAGATC CAAGCTGGTA
CGTTGGATAC GATTGGACAA TACAACATCA TGGATGCTGT TGATTTGGAA GATCATCATG ATGAGAGTAG AGGTGGTGAT
GTTTGGGAGG TGGCTGCCAA CATACTGAAG CCTATATTAT ATGGAGTGTT TAAGATGCCC CCAAGGAGAC TCTTGTCTCA
CTACAAGGTT GATTCTAGAA GAGACAGGCT ACTCACTGTG TCATGCAATG CAGAAGACAT GTTGCTTCCA CGCAGTAATT
TTACATTTAC GGAGTACGAC TCAAATTTCA AAGTAGTGCA GAAGCAAAAT TTCAGAATCC CAGATCACTT GATGATCCAT
GATTGGGCTT TCACAGATAC CCACTACATA GTGTTTGCCA ATCGCATAAA ACTCGATGTA CTAGGATCAA TGGCAGCAGT
GTATGGGATG TCTCCAATGA TATCAGCATT AAGAGTTAAC CCAAGTAAGA GCACATCTCC TATATACCTG ATTCCAAGGT
TTCCAGAGAA GCAAAAGGGC AAGGAGAGAG ATTGGAGAGT ACCAGTTGAA GCACCTTCAC AGTTGTGGTT GCTTCATGTT
GGCAATGCCT TTGAAGTTAG ACATCAACAT GGGAATTTGG ACATCCAAAT ACAAGCTGCT GCTTGCTCTT ACCAATGGTT
CAATTTCAGC AAATTATTTG GATACGACTG GCAAAAGAGG AAGCTAGACC CTGCAATAAT GAATGTCAAA GGTGGAACTG
AGTTATTGCC TCATCTTGTT CAGGTATCTA TAAAATTAGA TTCAGACTAC AATTGCCAAG AATGTAATGT GAAGCCCATG
AAGAAATGGA AGAAATCCTC AGATTTTCCG ACGACCAACC CAGCATTTTC CGGGAAGAAA AACAAATATC TGTACGCAGC
AACAACTTTA GGATCTCGAA AAACATTACC ATGTTTCCCT TTCGACACTG TAGTGAAACT AGATCTAGAC AATGATTCTG
CACAAACTTG GAGTGCTGGA AGAAGAAGAT TCATTGGTGA ACCCATTTTT GTTCCCAAAG GTGACGGAGA AGATGATGGC
TATCTTCTTG TCGTTGAGTA TGCTGTTTCA ATGAATAGAT GCTACCTCGT CATCTTGAAC CCAAAAAGGA TAGGATCAGA
TAATGCCCTT GTTGCCAGGA TCGAAATTCC AAGTCACTTA AATTTCCCTC TGGGTTTTCA TGGTTTCTGG GCAGCTAATT
AG

>Vigan.04G214200.01
MQTKPIHNTP TYIPPPIRPS PPVHQTPSST PPTKPRAISI STPNIPVAIP IPPTIEPDDS IAAYYDYQFL FMSQRSEATR
PITLSTVEGV IPVDFPTGTY YLTGPGLLTD DHGSTVHPLD GHGYLRAFTF DNVTKNVKYM AKYIRTEAHV EEHDPETKKW
KFTHRGPFSV LKGGKKVGNT KVMKNVANTS VLKWGGKLLC MWEGGEPYEI QAGTLDTIGQ YNIMDAVDLE DHHDESRGGD
VWEVAANILK PILYGVFKMP PRRLLSHYKV DSRRDRLLTV SCNAEDMLLP RSNFTFTEYD SNFKVVQKQN FRIPDHLMIH
DWAFTDTHYI VFANRIKLDV LGSMAAVYGM SPMISALRVN PSKSTSPIYL IPRFPEKQKG KERDWRVPVE APSQLWLLHV
GNAFEVRHQH GNLDIQIQAA ACSYQWFNFS KLFGYDWQKR KLDPAIMNVK GGTELLPHLV QVSIKLDSDY NCQECNVKPM
KKWKKSSDFP TTNPAFSGKK NKYLYAATTL GSRKTLPCFP FDTVVKLDLD NDSAQTWSAG RRRFIGEPIF VPKGDGEDDG
YLLVVEYAVS MNRCYLVILN PKRIGSDNAL VARIEIPSHL NFPLGFHGFW AAN*