GBrowse Details

Vigan.04G216600.01

Basic Information:
Name: Vigan.04G216600.01
Multiple alignment
Variant Information
Position: Chr04:31767158..31768179 (+ strand)
Length: 1022
Functional Information:
Description: Similar to uncharacterized protein. [C6T930, Glycine max]
InterPro: Light regulated Lir1 (IPR009856)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:78.36,30.65,6.71,2516.38,0.43,359.07,7.42,10.34
Arabidopsis thaliana homolog: AT3G26740.1
Automatic updates:
Name: NM_001248611 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative light-regulated protein 1 (LOC100305960), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:31767158..31767311 (+ strand)
Length: 154
Type: five_prime_UTR
Position: Chr04:31767312..31767496 (+ strand)
Length: 185
Type: CDS
Position: Chr04:31767569..31767727 (+ strand)
Length: 159
Type: CDS
Position: Chr04:31767931..31768006 (+ strand)
Length: 76
Type: CDS
Position: Chr04:31768007..31768179 (+ strand)
Length: 173
Type: three_prime_UTR


>Vigan.04G216600.01
AACCTTATCC CACACCTTAA ATATCTCACT TCATTACACT CTTGCACTGT CATATCCTAA ACCTTATCTC ACTCCATTTT
CTTCTATAAA AAGGAACCAC TGCTCCTCAT AATCTTAATC CAAGCTCAAA GTTCAGCAAA CCAACACCTT CAAGATGCAA
ACAGCTTTAA CCTTTGCTGT CCCGAACGTT GTGCCTTTGG CACCCACAAA GACTGTCACC CATCTCACCA ACTTCCCTAC
CAAATTGAAA ACCCCACGCC CCTCCCCTCG TTACTCTCCG ATAAGGGTTG CAACTGTGGA TCCCGACACT TCAACAGTGG
ACTACAACTC GGCCTTCTCA GTGTTTCCAG CAGAAGCATG CGAAACTGTA GGAGGGGAAG CCTGCATGGC AGAGATGTAC
CCTGAAGCCA AGCTGCAGCC ACAAGCTAAG AACGACACAC CACGAACAGC TACAGAGAAC GTTGAGAGAG AGTATCTTGA
ATACAATGAT CCTCAAACGG TATTTCGGGG AGAGGCTTGT GATGATCTTG GAGGAACTTT CTGTGAGCCC GAGTTTCAGA
AGAATGTATA TTAGACCAAA CACAAAATCT TCATGTTTTC ATGCCTACTT AACTTTTCAT ATCAACTTAT GTGTTTGGTT
GTACATAGTT ATAGACTCTT TTGAGTTTCG TATAAATTTT ACAATAATTA TACACTAAAT TTGATAGCTT TGACTCTCCT
TCTTCGTTGG TTTAAAATTA AATTAAA

>Vigan.04G216600.01
ATGCAAACAG CTTTAACCTT TGCTGTCCCG AACGTTGTGC CTTTGGCACC CACAAAGACT GTCACCCATC TCACCAACTT
CCCTACCAAA TTGAAAACCC CACGCCCCTC CCCTCGTTAC TCTCCGATAA GGGTTGCAAC TGTGGATCCC GACACTTCAA
CAGTGGACTA CAACTCGGCC TTCTCAGTGT TTCCAGCAGA AGCATGCGAA ACTGTAGGAG GGGAAGCCTG CATGGCAGAG
ATGTACCCTG AAGCCAAGCT GCAGCCACAA GCTAAGAACG ACACACCACG AACAGCTACA GAGAACGTTG AGAGAGAGTA
TCTTGAATAC AATGATCCTC AAACGGTATT TCGGGGAGAG GCTTGTGATG ATCTTGGAGG AACTTTCTGT GAGCCCGAGT
TTCAGAAGAA TGTATATTAG 

>Vigan.04G216600.01
MQTALTFAVP NVVPLAPTKT VTHLTNFPTK LKTPRPSPRY SPIRVATVDP DTSTVDYNSA FSVFPAEACE TVGGEACMAE
MYPEAKLQPQ AKNDTPRTAT ENVEREYLEY NDPQTVFRGE ACDDLGGTFC EPEFQKNVY*