GBrowse Details

Vigan.04G218500.01

Basic Information:
Name: Vigan.04G218500.01
Multiple alignment
Variant Information
Position: Chr04:32039845..32042211 (+ strand)
Length: 2367
Functional Information:
Description: Similar to Uncharacterized protein. [I1MLC2, Glycine max]
InterPro: GRAM domain (IPR004182)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:391.56,74.01,3.27,1.23,1.66,2.25,2.12,4.16
Arabidopsis thaliana homolog: AT5G13200.1
Automatic updates:
Name: NM_001255711 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GEm-Related 5-like protein (LOC100811963), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:32039845..32040083 (+ strand)
Length: 239
Type: five_prime_UTR
Position: Chr04:32040084..32040435 (+ strand)
Length: 352
Type: CDS
Position: Chr04:32040719..32040993 (+ strand)
Length: 275
Type: CDS
Position: Chr04:32041292..32041525 (+ strand)
Length: 234
Type: CDS
Position: Chr04:32041526..32042211 (+ strand)
Length: 686
Type: three_prime_UTR


>Vigan.04G218500.01
AGTTGGTCCA CGTATGTTCA CTTTGATTAA CATCTTAGTT ACTAAGCTTT CTTTTTCCCA CGGTTTCGAT GGCGGTGTAG
GACTACTATC TTTCTCGAAA GCGTAAGCGC GTAAAACTTT CCTTCCAAAC TCAACTACTA ATATGATACC TCCTATGTAT
GTATCATTCT GAACCAACCC AAACACCTCA TTTCCCAAAA ACTCAATTCC ATTGATCTTT CTCTTGCACA TAAAACAACA
TGAACACCAA CAGCGAAAAC ACCACCCAGA AGAACCAGCC GGTTCCAGAA GCACAAGGTG TGGCATCATC TTCATCGTCT
TCTCCGCCCA GCGTTAGCAC CGAGAATTGG GGAACTCACA TCATGGGCAC CCCAGCTGTT CCCAGCAGCC ACCCAGATAA
CAAAAAAGCA GCTTTACAGA GCGGTGGTTC CGGCGGACAA CCTCTGCCAG TTCAATACTA CCAACAACAT CCGTACGTCC
AACACAGCCC TGTGGACAAA CCCAGCAACA GTCCCATGGA GTCCATCCTT CACATGTTCG ATACGTGGAG CAAAAAGGCT
GAAGCAACTG CCCACAACGT CTGGCACAAC CTTAGAACTG GTCCATCAGT GTCTTCAGCT GCACTGGGGA AGATGAATCT
GACTGTGAAA GCAATATCAG AGGGTGGATT TGAGTCCCTT TACAAGCAAA CATTCTCAAC CTATCAAAAT GAGAAGCTCA
AGAAGAGCTT TGCTTGTTAT CTTTCAACTT CAACAGGTCC TGTTGCAGGA ACCCTTTACC TGTCCAATAT TCATGTAGCC
TTTTGCAGTG ATCGCCCATT GTCTTTCACC GCACCCTCTG GCCAGGAAAC TTGGACCTAC TACAAGGTAA TGGTGCCTCT
GGCGAAGGTT GGAACAGTCA ACCCAGTGGT CATGAGAGAG AACCCATCAG AAAAGTACAT TCAGATTGTG ACTGTGGATG
GACATGATTT TTGGTTCATG GGTTTTGTAA ATTTTGACAA AGCAGTGAAG AACCTCTCAG AAGGTATCTC ACAGTTTGTA
GTGCCAGGAG TGGCTGTGCC AGCCACTGGT TCCGGAGAAA ATGGAAAGAA CTTTCAGTGA TTTCTGTATT GAATTATTTT
CGTGTATAAT TTTGCTTAAA ATTTTTTGTA GTGCATTGGA CCAATACTTT ATTGTAAATT TTTGTATGAG TGAATGCTGC
TATATATTTC ATAATACACA GTTAAAATAT GATGTCTGTT CTGCATCTTT TCTTTTTTCT CCCTCTGATG TGATCTTACA
TTTTTCAATG ATCTGTAAAA TATAATAATG CAAACTAATC AAAATGCAAT TAATTAGAAG AGATTCTGAA GTGGGAAGGA
AGGAGTAGTT TTCACATTTC AAAGCAGCTT CATTCCAAGT TCTTTTTTTT TCGAGTCCAT TTTCTAATCA ACAATTTGCC
AAGTGTGGAG TTCTCCAATC TGTATACATA TCTCTATAGG GTAAAAAGAA TACATGACGA TAGTCCCTTG TTATTTAGAT
AGTCCCTTGT GGCAAATCTG TTGTGTGAAA CCCTCCAAGA AAAGTGGTGT GTAGATGGTA AAGCTTTTAC CTTCCAAAAC
TAATTGAGAA AAACGTGTTC TTCTTCAATT AACTCATGTT GCAGTATTTT GTAAATTGAC TTAACATGAT ATGTTTTTGT
TTCTGTATCC TTCCATATCT ATACACTTCT CTTGTTCTAT GTGGGTATTT TTCTTCAATT ACTTGTGTCA GATTTTATTT
AGGGAAGTTC TCATTCAAAC CAACTC

>Vigan.04G218500.01
ATGAACACCA ACAGCGAAAA CACCACCCAG AAGAACCAGC CGGTTCCAGA AGCACAAGGT GTGGCATCAT CTTCATCGTC
TTCTCCGCCC AGCGTTAGCA CCGAGAATTG GGGAACTCAC ATCATGGGCA CCCCAGCTGT TCCCAGCAGC CACCCAGATA
ACAAAAAAGC AGCTTTACAG AGCGGTGGTT CCGGCGGACA ACCTCTGCCA GTTCAATACT ACCAACAACA TCCGTACGTC
CAACACAGCC CTGTGGACAA ACCCAGCAAC AGTCCCATGG AGTCCATCCT TCACATGTTC GATACGTGGA GCAAAAAGGC
TGAAGCAACT GCCCACAACG TCTGGCACAA CCTTAGAACT GGTCCATCAG TGTCTTCAGC TGCACTGGGG AAGATGAATC
TGACTGTGAA AGCAATATCA GAGGGTGGAT TTGAGTCCCT TTACAAGCAA ACATTCTCAA CCTATCAAAA TGAGAAGCTC
AAGAAGAGCT TTGCTTGTTA TCTTTCAACT TCAACAGGTC CTGTTGCAGG AACCCTTTAC CTGTCCAATA TTCATGTAGC
CTTTTGCAGT GATCGCCCAT TGTCTTTCAC CGCACCCTCT GGCCAGGAAA CTTGGACCTA CTACAAGGTA ATGGTGCCTC
TGGCGAAGGT TGGAACAGTC AACCCAGTGG TCATGAGAGA GAACCCATCA GAAAAGTACA TTCAGATTGT GACTGTGGAT
GGACATGATT TTTGGTTCAT GGGTTTTGTA AATTTTGACA AAGCAGTGAA GAACCTCTCA GAAGGTATCT CACAGTTTGT
AGTGCCAGGA GTGGCTGTGC CAGCCACTGG TTCCGGAGAA AATGGAAAGA ACTTTCAGTG A

>Vigan.04G218500.01
MNTNSENTTQ KNQPVPEAQG VASSSSSSPP SVSTENWGTH IMGTPAVPSS HPDNKKAALQ SGGSGGQPLP VQYYQQHPYV
QHSPVDKPSN SPMESILHMF DTWSKKAEAT AHNVWHNLRT GPSVSSAALG KMNLTVKAIS EGGFESLYKQ TFSTYQNEKL
KKSFACYLST STGPVAGTLY LSNIHVAFCS DRPLSFTAPS GQETWTYYKV MVPLAKVGTV NPVVMRENPS EKYIQIVTVD
GHDFWFMGFV NFDKAVKNLS EGISQFVVPG VAVPATGSGE NGKNFQ*