VIGGS:GBrowse

Vigan.04G222400.01

Basic Information:

Name:	Vigan.04G222400.01 Multiple alignment Variant Information
Position:	Chr04:32453930..32455696 (+ strand)
Length:	1767

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MLE9, Glycine max]
InterPro:	Pollen Ole e 1 allergen/extensin (IPR006041)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,11.75,5.24,69.82,41.94,4.43,4.73
Arabidopsis thaliana homolog:	AT3G26960.1

Automatic updates:

Name:	NM_001248901 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500029 (LOC100500029), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:32453930..32454310 (+ strand)
Length:	381
Type:	five_prime_UTR

Position:	Chr04:32454311..32454494 (+ strand)
Length:	184
Type:	CDS

Position:	Chr04:32454850..32455187 (+ strand)
Length:	338
Type:	CDS

Position:	Chr04:32455188..32455696 (+ strand)
Length:	509
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G222400.01
TTTTTATGTG CCTGTGGTGG CATTTTCCCG AGTGGTATAT CTCTATTTAA ACCAAACCCC ATTTCTCAAC ATCCCCAATA
GAAGCTATCT TGTTCTTCTC CAACAAAAGA ATCTACCACC ACTTCTCTCT CCTACTCATG AACTCCATGT CTTGCCAAAC
AACATTCACA TGTCTTTGTT TCTTGTGAAA AAAAGATAAA ATTACTTTCA ACCTTTTGCT TGGAGTTGGT TCTCCACTAA
CCACTGCTCC TCTTTATCCA CACCCCTACT ACCAGCAAAA TGCTAATGCT CTGAAAGAAA AACATAGTTC TAGCTGCTGC
TGCTGCTCAT CATAAAGACC ACATTCGGAC GCTTCCTCCA TTTTCTTTTC CAAACTTGGC CATGAATCCC ACAACCCTCT
TGCTCCTTTT GCCCTTGTTC ACTCAGTTTT TGGAAGTTGA GCCTGCAAAA CCCAAGCTTC CAGGGAAAAC CAGGTTCCCC
ATCTCACAAA TCAGTGTGAT GGGCTTTGTA TATTGCGATT TCTGCTCCAA TAACAGCTTT TCCGGACACA GCTACTTTTT
GCCAGGTGCT GAGGTGAAAG TAGATTGCAT GTTCAAAGCA CTCTCAGAGA AAACTGCTGA ACAGATTTCA CTTTCAGTGA
ACAGAACTAC CAACAAGTTT GGGATGTACA AGCTGGAAAT TCCTTCAGTT GATGGTGTGA AATGTGCAGA AGATTCTGTA
GTTGTGTCTT CATGCCAAGC AAGCTTAATA GGTAGTTCAT CCTCTGCTTG CAATGTTCCT GGCTACAGAA CCACTTCTAA
TGTGATTGCA ATCAAAGCAA GAAAAGCTAA CCTCTGCATA TACAGCTTCA ATGCTTTGAC TTTCAGACCA TCCAAGAGGG
ACATCACCCT CTGTGGTAAT TAAAAGAAGA AGCTTACACA AGTAGGCCTA GAGCTTGGTC ACTTGTGTAT ACATACAAAT
TTCAAGAAAA TAAATGAAAA AAAAAAAAAA AAAACTCATA TGTTCTCTTT TTGAAGCCCA TTATGGGCAC AGATCTCTTG
TCTCTCTCTC TTCATTGTTT TACTGCATTA TTTGTTTGGT AATACTGTTT TCATATTATG CTACGTTAGA GAAAGTATCA
TGGAAGTAGA GTTTGGGTGT GAGAGATAGT TCCTTTTTGA TTTATGCAGT TGATTAGGTT TTGTTAAAAT GTACTGGTAG
ATGTATATTG TACAGAGCAT GCAAGTTGTT AAAGAAGGAA CACATGAATA AACAAGTTAT TGTTGTGCAT ATTATATTTC
CCATATGGAT AAACACTTTG GCAAAAGAGA AGGGAGAAGG AGCATATATA TCAAAATAAA TGGGAGAAAT CTTCAGTTCA
GGATCAATTT CTAAGGAGTA AATATACAAC TTTCTTTTCT GAAAAAAAGT GA

[show][hide][copy]CDS

>Vigan.04G222400.01
ATGAATCCCA CAACCCTCTT GCTCCTTTTG CCCTTGTTCA CTCAGTTTTT GGAAGTTGAG CCTGCAAAAC CCAAGCTTCC
AGGGAAAACC AGGTTCCCCA TCTCACAAAT CAGTGTGATG GGCTTTGTAT ATTGCGATTT CTGCTCCAAT AACAGCTTTT
CCGGACACAG CTACTTTTTG CCAGGTGCTG AGGTGAAAGT AGATTGCATG TTCAAAGCAC TCTCAGAGAA AACTGCTGAA
CAGATTTCAC TTTCAGTGAA CAGAACTACC AACAAGTTTG GGATGTACAA GCTGGAAATT CCTTCAGTTG ATGGTGTGAA
ATGTGCAGAA GATTCTGTAG TTGTGTCTTC ATGCCAAGCA AGCTTAATAG GTAGTTCATC CTCTGCTTGC AATGTTCCTG
GCTACAGAAC CACTTCTAAT GTGATTGCAA TCAAAGCAAG AAAAGCTAAC CTCTGCATAT ACAGCTTCAA TGCTTTGACT
TTCAGACCAT CCAAGAGGGA CATCACCCTC TGTGGTAATT AA

[show][hide][copy]PROTEIN

>Vigan.04G222400.01
MNPTTLLLLL PLFTQFLEVE PAKPKLPGKT RFPISQISVM GFVYCDFCSN NSFSGHSYFL PGAEVKVDCM FKALSEKTAE
QISLSVNRTT NKFGMYKLEI PSVDGVKCAE DSVVVSSCQA SLIGSSSSAC NVPGYRTTSN VIAIKARKAN LCIYSFNALT
FRPSKRDITL CGN*