GBrowse Details

Vigan.04G223800.01

Basic Information:
Name: Vigan.04G223800.01
Multiple alignment
Variant Information
Position: Chr04:32781193..32783548 (+ strand)
Length: 2356
Functional Information:
Description: Similar to WRKY transcription factor 75. [XP_003549123.1, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: DNA-binding WRKY (IPR003657)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.50,0.18,3.21,1.83,8.46,0.28,24.76,0.39
Arabidopsis thaliana homolog: AT5G13080.1
Automatic updates:
Name: DQ322693 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY53 mRNA, complete cds.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Name: NM_001250428 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY transcription factor 53 (WRKY53), mRNA.
PubMed ID: 26102586 NCBI(pubmed)
23511199 NCBI(pubmed)
18384508 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:32781193..32781382 (+ strand)
Length: 190
Type: five_prime_UTR
Position: Chr04:32781383..32781783 (+ strand)
Length: 401
Type: CDS
Position: Chr04:32782973..32783150 (+ strand)
Length: 178
Type: CDS
Position: Chr04:32783151..32783548 (+ strand)
Length: 398
Type: three_prime_UTR


>Vigan.04G223800.01
GTGCATGTAT GTATCGATGA TATTAGCCAC GTTAACATTA AGCGCCGCCC CAACCATTTA TATTTGTTGA AATCTTTTTA
CCACACACAC TTTTCTTTTT CCAAACCCTC TTCCCTCACT ACCAACAACT TCTTTTCTCT CTCTACCGAT ATATATAGTA
AGAAGGAAAA TTGAGGTTGG GTTGGTTTCG ATGGAGAATT ATAGCATGTT GTTTCCTTGT TCCAATTCTT CCAGCTACCC
CATTTCAAAG AGTGGCGTGG GAACCTCTCA GCATGGTTTT GGTGGTCAAA GCTCCAATGC ATTCCTAGGT CTAAGGCCTA
GTAATGAGAG TAGTGGTAGT GATCATGAAA ACAAAGGAGA AGGTGGTAGA GATGCTGCCA TGTTAATGTC TCAGATCACT
GGTGGCATTA ATGTGAGTGA TGAGTTAGGT GGTTTGGGAA ATGGTAACAG TAATGGCAAA AAGAAAGGGG AGAAAAAGGT
TCGAAAGCCT AGATATGCTT TCCAAACCAG GAGCCAGGTT GATATTCTTG ATGATGGGTA TCGGTGGAGG AAGTATGGCC
AAAAAGCTGT CAAAAACAAC AAGTTTCCGA GGAGTTACTA CAGGTGCACG CATCAAGGGT GCAATGTGAA GAAGCAAGTC
CAACGCCTAA CCAAAGACGA AGGGGTAGTG GTGACTACTT ATGAAGGAGT CCACACTCAT CCAATTGAGA AGACAACAGA
TAACTTTGAA CACATTTTGA GTCAGATGCA AATATACACT CCCTTTTGAA GCTTCTTTTC CACCACCACT GGCAGATTTA
TGTCTTCTTC TGCCAATTAC GTCGTCAATG GGAACTGTTA TAGTACTTTA GTTCCCCTTT TGATACAAAA ATAAGATTAT
TGTCCATACA ACTATCATCT AGTTTGCTTA AACTCTTCTT AGACAATCTT CTTTCTTTCT TTCTTTACAT TTTTTTTTTC
TCAAATTGGG TGTTCTGGTT CAAAGTTTTA TCATGACAGT ACAACTAGGT TATGTAAATT CAGCTCTCAG TCCAGCAGCT
GAAAATATAT ACAGGCGAAT ATCCTTTATT CCTTTAATTG GTGGTTATTT GGAATACAAA CTAGTAGAAA TATTAACTCT
GATTTTTGTG CATTGAGGAG GATAATTGAT GTCAAACTGT AAGGAAC

>Vigan.04G223800.01
ATGGAGAATT ATAGCATGTT GTTTCCTTGT TCCAATTCTT CCAGCTACCC CATTTCAAAG AGTGGCGTGG GAACCTCTCA
GCATGGTTTT GGTGGTCAAA GCTCCAATGC ATTCCTAGGT CTAAGGCCTA GTAATGAGAG TAGTGGTAGT GATCATGAAA
ACAAAGGAGA AGGTGGTAGA GATGCTGCCA TGTTAATGTC TCAGATCACT GGTGGCATTA ATGTGAGTGA TGAGTTAGGT
GGTTTGGGAA ATGGTAACAG TAATGGCAAA AAGAAAGGGG AGAAAAAGGT TCGAAAGCCT AGATATGCTT TCCAAACCAG
GAGCCAGGTT GATATTCTTG ATGATGGGTA TCGGTGGAGG AAGTATGGCC AAAAAGCTGT CAAAAACAAC AAGTTTCCGA
GGAGTTACTA CAGGTGCACG CATCAAGGGT GCAATGTGAA GAAGCAAGTC CAACGCCTAA CCAAAGACGA AGGGGTAGTG
GTGACTACTT ATGAAGGAGT CCACACTCAT CCAATTGAGA AGACAACAGA TAACTTTGAA CACATTTTGA GTCAGATGCA
AATATACACT CCCTTTTGA

>Vigan.04G223800.01
MENYSMLFPC SNSSSYPISK SGVGTSQHGF GGQSSNAFLG LRPSNESSGS DHENKGEGGR DAAMLMSQIT GGINVSDELG
GLGNGNSNGK KKGEKKVRKP RYAFQTRSQV DILDDGYRWR KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLTKDEGVV
VTTYEGVHTH PIEKTTDNFE HILSQMQIYT PF*