GBrowse Details

Vigan.04G225500.01

Basic Information:
Name: Vigan.04G225500.01
Multiple alignment
Variant Information
Position: Chr04:33137899..33140522 (+ strand)
Length: 2624
Functional Information:
Description: Similar to zinc finger protein 511-like. [XP_004513314.1, Cicer arietinum]
GO: Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.95,15.45,7.68,8.66,6.87,8.47,12.13,9.50
Arabidopsis thaliana homolog: AT5G14140.1
Automatic updates:
Name: NM_001255355 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100819557 (LOC100819557), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:33137899..33137934 (+ strand)
Length: 36
Type: five_prime_UTR
Position: Chr04:33137935..33138168 (+ strand)
Length: 234
Type: CDS
Position: Chr04:33138266..33138330 (+ strand)
Length: 65
Type: CDS
Position: Chr04:33138984..33139182 (+ strand)
Length: 199
Type: CDS
Position: Chr04:33139601..33139966 (+ strand)
Length: 366
Type: CDS
Position: Chr04:33139967..33140522 (+ strand)
Length: 556
Type: three_prime_UTR


>Vigan.04G225500.01
TTTTGAGCCC AAGTATATAG AGTCCGACAG AAACATATGA CTCAAAAATA TGGTCCGCAC TCTGAAGTTT CTATTCAATT
CAAAATTGAA AGTGGAAAGA GAATACCTTG TGTGATTGAA GTGAAGAGTG TGAAGATGGC GATGGAAGTG GAGAACAATC
ACAATCAACA ATTAGGGTTT CCGTTCTGGA AACCGATCCG TCGCAAGTTC GGGCCCGACT CTCCTTTCTT CGCTCCCGGC
AATCTCGAAC GAGAACTTCT TGCCAAACAG GTTGCTTTGG AATTGACAGA AGAGAAGGAA CAGCTTGAGA AATGGATGCA
AGAGGAAGAA GGAAGGGAAA TCTTTTGTCC CATTGTTGGC TGTGGTGCAC GCTTGACTTC AATGGATGAC TTCGAGAATC
ACTATAATGC AAGGCATACT GCATCTTGTT CTGTGTGCTT TAGAGTTTAC CCAACGTCTC GGTTGCTCAG CATACATGTA
TCTGAAGTGC ATGATTCTTT CTTTCAGGCA AAAGTTGCAC GTGGTTACGA TATGTATGAA TGCTTGGTGG AAAAGTGTGG
TTTGAAATTC AAAAGCTACA ATCGTAGGCA TCAGCATCTG GTTGACAAGC ATAAATTTCC CACCTCATTT GAGTTTTTCA
AGAAGGCTAA ACCTTCAAAG AAACAGAGAT TGAAGTCCCA ACAAAAAAAA GCTGTTCCTA AGGAGAAGGA TGCAGGAATG
ATGGAAGTGG AAAACGCAAC CGTGGATGAC CTTGTTTCAG CAGTCTCTAA ACTGAGCACT TCTGACTCCA CCCCTTCAAA
TATCAGCTTT GGTCGCCGCA GCAAAGGCTT GTCATTCGTC CCTCGAACTG TTCAGCGCAG AGATCAATCA AACCCAGCAG
CATCTGGGAC AAAGAGATAA AGCTTGCACT CAAACCACTC TGCATTCTTA ATTGCAAAAT GATCAAATAT TCAGATACTG
CTCCATTATA AGATGTGTGT CTTGTGCTCA AAGTTTGAAG AAGCTGATAA AGTTGAAGAT AGGAAAAGCA GATCATGCTG
GAGGATGTAA TAAGCAGCTT GCGGCAGTTT TATATTTTCA ATGCGCCCGT TGTGGCTATA ACACAGGCAT TGTGGACATG
CGAATATCCC TTGGCTTTCT GTGGAGATAT TGAGCTTAAT TTTGTATGAT ATGGTCCTGT TAGTCTTAAC GCATTTACTG
AATAGCTACT TTGTGATTAG TTTAAAGAAA ACACTCTTGA AGCTTGTCAT ATGCTTAACC CAGTGACGGA ATATCCCGCT
AGTTAGTGAA TGGTTCAGGC TTCCTGTCAG CATGATATGT GATTTCTATT TCTGTAAAAT TTGATTTGGT AAATTGGTTA
ACACGAAGTT CTTCTGCTTA ATATTTTTTT TCATTTTACA TGCAACTGAG ACCACTTGAG AATTTGTACG GTTTTTTGCA
ACCTTTCCAA CATGGA

>Vigan.04G225500.01
ATGACTCAAA AATATGGTCC GCACTCTGAA GTTTCTATTC AATTCAAAAT TGAAAGTGGA AAGAGAATAC CTTGTGTGAT
TGAAGTGAAG AGTGTGAAGA TGGCGATGGA AGTGGAGAAC AATCACAATC AACAATTAGG GTTTCCGTTC TGGAAACCGA
TCCGTCGCAA GTTCGGGCCC GACTCTCCTT TCTTCGCTCC CGGCAATCTC GAACGAGAAC TTCTTGCCAA ACAGGTTGCT
TTGGAATTGA CAGAAGAGAA GGAACAGCTT GAGAAATGGA TGCAAGAGGA AGAAGGAAGG GAAATCTTTT GTCCCATTGT
TGGCTGTGGT GCACGCTTGA CTTCAATGGA TGACTTCGAG AATCACTATA ATGCAAGGCA TACTGCATCT TGTTCTGTGT
GCTTTAGAGT TTACCCAACG TCTCGGTTGC TCAGCATACA TGTATCTGAA GTGCATGATT CTTTCTTTCA GGCAAAAGTT
GCACGTGGTT ACGATATGTA TGAATGCTTG GTGGAAAAGT GTGGTTTGAA ATTCAAAAGC TACAATCGTA GGCATCAGCA
TCTGGTTGAC AAGCATAAAT TTCCCACCTC ATTTGAGTTT TTCAAGAAGG CTAAACCTTC AAAGAAACAG AGATTGAAGT
CCCAACAAAA AAAAGCTGTT CCTAAGGAGA AGGATGCAGG AATGATGGAA GTGGAAAACG CAACCGTGGA TGACCTTGTT
TCAGCAGTCT CTAAACTGAG CACTTCTGAC TCCACCCCTT CAAATATCAG CTTTGGTCGC CGCAGCAAAG GCTTGTCATT
CGTCCCTCGA ACTGTTCAGC GCAGAGATCA ATCAAACCCA GCAGCATCTG GGACAAAGAG ATAA

>Vigan.04G225500.01
MTQKYGPHSE VSIQFKIESG KRIPCVIEVK SVKMAMEVEN NHNQQLGFPF WKPIRRKFGP DSPFFAPGNL ERELLAKQVA
LELTEEKEQL EKWMQEEEGR EIFCPIVGCG ARLTSMDDFE NHYNARHTAS CSVCFRVYPT SRLLSIHVSE VHDSFFQAKV
ARGYDMYECL VEKCGLKFKS YNRRHQHLVD KHKFPTSFEF FKKAKPSKKQ RLKSQQKKAV PKEKDAGMME VENATVDDLV
SAVSKLSTSD STPSNISFGR RSKGLSFVPR TVQRRDQSNP AASGTKR*