GBrowse Details

Vigan.04G226100.01

Basic Information:
Name: Vigan.04G226100.01
Multiple alignment
Variant Information
Position: Chr04:33217261..33220655 (+ strand)
Length: 3395
Functional Information:
Description: Similar to Uncharacterized protein. [I1N7S1, Glycine max]
InterPro: Development/cell death domain (IPR013989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:127.37,90.18,41.63,32.24,48.94,47.76,54.68,56.71
Arabidopsis thaliana homolog: AT3G27090.1
Automatic updates:
Name: NM_001252937 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max B2 protein-like (LOC100775724), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:33217261..33218202 (+ strand)
Length: 942
Type: five_prime_UTR
Position: Chr04:33218203..33218767 (+ strand)
Length: 565
Type: CDS
Position: Chr04:33218861..33218961 (+ strand)
Length: 101
Type: CDS
Position: Chr04:33219696..33219779 (+ strand)
Length: 84
Type: CDS
Position: Chr04:33219864..33219974 (+ strand)
Length: 111
Type: CDS
Position: Chr04:33220091..33220138 (+ strand)
Length: 48
Type: CDS
Position: Chr04:33220139..33220655 (+ strand)
Length: 517
Type: three_prime_UTR


>Vigan.04G226100.01
CAGCGAAGTC ATAAAAGGTA CTATCTGTTT CTCTCTCCTC ACATCTTCGG ATCCCTAAAT CTAGGGCTTC GTCTATTTCT
TCGGAATTCG TCTAGTCAGT TTCTTAATTT CGTTATCAAT TCTCGATTTG GAATCTCCGT CTCTGTTTAC TTTTCTTCTT
TGAAGTCGTG TTTTGCTCTC TTCACTGTGC TGATTTTGGT AATTTCTTAT TCTATCTGTG AATGCTCTCT TCGGATCCTC
GATTTCCTTC CTTGATCTTG GTTGTTTTGT TTAATTTTCG TCGTGCCTGC GGATATTTGT GCGAGATGTG AGTGAAGGTT
CTAGTTTTGT TTTATTTCTG TGTTCTTTTT TGTTGAGTTT GAACTTGCGT TCGTACTTTC GCTGTTTGAT GCTGGATTTG
TAATTGGGTT TGCTGCTGTG TGCATGGATA CTTGGATTTC GTGCGGAGTT GCATGAAAGG AAAGGGAGGA AACCAGTGTT
TTTGAAAATG AATTATGAGA TTTTTGAGAG CTCTTTTATT TGCTTTGTTT GTGATGGTTA GAATTAGAAA TTACTAGATT
TATGTTTTTT CCTTTTTTTG CTTTTGGGGT AATTGGAAGT TGCAAAAAGC CCACTACTAC GAAGTTTTAT AATCAATTAC
CCTTATTAGT CCTCAATATT GGTGTAATTT AAAAAACTTT AAGTAAGAAT TTTCGATTGC TGTAGTTGGC AATGGTACTC
CTCCAAATGT ATGGCAAATG TTGTTGTATG CTCATATGAA CTGTTATAAG TCTAGTTATG CGTTTGACAT ATGTCAGCAC
AAAAGAGGAA GATGTTGAAT TATTTTCATT TTTCCCAATT GGATGTTTGC TAACTATGTC CTGTTTATTG CTGTATTTTT
TCTGTTGATT TAATTCGTGA TGTGGTCTAT ATTGTGTTTA TAACTTGTCA GGGTTTCAAC AGATGGAAAA CATGCAGAGC
TTCTGGCAAT TGGGTGATGA GCTTCGTGGA CACTCAAAAG CGTCAGAGGA TCACAAGTGG TTAATGGTTG CTTCTAAGTT
GGCTGAACAG ACAAGATTGA AGGGGGAGCG TGTGAATAAC CTTGACCTTT CAAAGGGCCC CATTGAAACA AGGTCAAGGG
ATAAATTTGG GTTCCAGGAA GAGAACAAAT TTGATTCTCT CAACTTGAGC ATGTTGAACC TGGACTCTAA ATTTACTGAA
AATGTGAGCA AAAGCTCACT TCGGAATAGT GTTTACAGTA TGAATGCAGT GTATCAGAAA AACAATGCAA ACTTGGTGAG
TAATGTGAAC AGTAACAAGT ACAGTGGTAA TATTCAGCAT AACAAAGAGT CCAACAATAA CAGTGGCAAC AGCAATAACA
ATGAGAGCAA CAACTCAAAT TCAACTGACA AAAGGTTTAA GACCTTGCCT GCAGCCGAGA CACTCCCACG CAATGAGGTG
CTTGGAGGAT ACATATTTGT CTGTAACAAT GACACAATGC AGGAAGACTT GAAACGTCAG CTATTTGGCT TGCCTCCAAG
GTATCGAGAT TCTGTTCGGG CAATAACACC AGGATTACCT CTATTTCTGT ATAACTATAC TACTCATCAG CTGCATGGCA
TTTTTGAGGC AGCAAGTTTT GGTGGCTCTA ACATAGATCC AACTGCCTGG GAGGATAAAA AATGCAAAGG CGAATCAAGG
TTTCCAGCTC AGGTAAGAAT CCGTGTTAGG AAACTCTGCA AGGCATTGGA AGAAGATTCG TTCAGGCCAG TATTGCATCA
TTATGATGGT CCAAAGTTTC GTCTTGAGCT GTCAGTTCCA GAGACTCTGG ATCTGTTGGA CTTATGTGAG CAAGCTGGTT
CGGCAGCATA AGCAAACAAA CAAGGAATTT GCAAAATAGG TAGGTTTTGG TGTGCCAGCT GTGTGGTTTT GGCAGATTTT
CCGTGAAGCG TAAGCTTGGA AATTAGTTTG TTGATGGATC ATCTTGGGGG AAGTAAAGGG AGCGTGTTGA GAGTGAGACC
CTTTTGTCTG GTTGGTGAAT AAATGTTGTG CTATCTTATC CCCTGAAGAT GCTTTGTAGC TGTTGCATGA CATTTAATAC
TTTTGTATGA TTAAGTTAGT ACAGACCTGT ATGCAATCAA AGAGACAACT GTTTGTACTG GTATATCATG AATTTGTTGA
ACTAAGCAAA TATAAAATTT TTTAAGTTTC GGTTACTTCT AAACTCTATG AGTTGGCTGA AGTGATCGTG GGGTCGTGGA
AAATAGATTA TCTCAATAAT TGATTACATC TGTAATCTGC TTTCATTACA ATAGATTATT CAATATCAGT TTGTTGTTAT
GCTAAGTTTA GTAAAATATA GTTATGAAAT AATTAATTTT GATTGAGG

>Vigan.04G226100.01
ATGGAAAACA TGCAGAGCTT CTGGCAATTG GGTGATGAGC TTCGTGGACA CTCAAAAGCG TCAGAGGATC ACAAGTGGTT
AATGGTTGCT TCTAAGTTGG CTGAACAGAC AAGATTGAAG GGGGAGCGTG TGAATAACCT TGACCTTTCA AAGGGCCCCA
TTGAAACAAG GTCAAGGGAT AAATTTGGGT TCCAGGAAGA GAACAAATTT GATTCTCTCA ACTTGAGCAT GTTGAACCTG
GACTCTAAAT TTACTGAAAA TGTGAGCAAA AGCTCACTTC GGAATAGTGT TTACAGTATG AATGCAGTGT ATCAGAAAAA
CAATGCAAAC TTGGTGAGTA ATGTGAACAG TAACAAGTAC AGTGGTAATA TTCAGCATAA CAAAGAGTCC AACAATAACA
GTGGCAACAG CAATAACAAT GAGAGCAACA ACTCAAATTC AACTGACAAA AGGTTTAAGA CCTTGCCTGC AGCCGAGACA
CTCCCACGCA ATGAGGTGCT TGGAGGATAC ATATTTGTCT GTAACAATGA CACAATGCAG GAAGACTTGA AACGTCAGCT
ATTTGGCTTG CCTCCAAGGT ATCGAGATTC TGTTCGGGCA ATAACACCAG GATTACCTCT ATTTCTGTAT AACTATACTA
CTCATCAGCT GCATGGCATT TTTGAGGCAG CAAGTTTTGG TGGCTCTAAC ATAGATCCAA CTGCCTGGGA GGATAAAAAA
TGCAAAGGCG AATCAAGGTT TCCAGCTCAG GTAAGAATCC GTGTTAGGAA ACTCTGCAAG GCATTGGAAG AAGATTCGTT
CAGGCCAGTA TTGCATCATT ATGATGGTCC AAAGTTTCGT CTTGAGCTGT CAGTTCCAGA GACTCTGGAT CTGTTGGACT
TATGTGAGCA AGCTGGTTCG GCAGCATAA

>Vigan.04G226100.01
MENMQSFWQL GDELRGHSKA SEDHKWLMVA SKLAEQTRLK GERVNNLDLS KGPIETRSRD KFGFQEENKF DSLNLSMLNL
DSKFTENVSK SSLRNSVYSM NAVYQKNNAN LVSNVNSNKY SGNIQHNKES NNNSGNSNNN ESNNSNSTDK RFKTLPAAET
LPRNEVLGGY IFVCNNDTMQ EDLKRQLFGL PPRYRDSVRA ITPGLPLFLY NYTTHQLHGI FEAASFGGSN IDPTAWEDKK
CKGESRFPAQ VRIRVRKLCK ALEEDSFRPV LHHYDGPKFR LELSVPETLD LLDLCEQAGS AA*