VIGGS:GBrowse

Vigan.04G232000.01

Basic Information:

Name:	Vigan.04G232000.01 Multiple alignment Variant Information
Position:	Chr04:34130532..34132708 (- strand)
Length:	2177

Functional Information:

Description:	Similar to Uncharacterized protein. [I1N828, Glycine max]
GO:	Biological Process: metabolic process (GO:0008152)
	Biological Process: biosynthetic process (GO:0009058)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: transferase activity, transferring acyl groups (GO:0016746)
	Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro:	Chalcone/stilbene synthase, N-terminal (IPR001099)
	Polyketide synthase, type III (IPR011141)
	Chalcone/stilbene synthase, C-terminal (IPR012328)
	Thiolase-like, subgroup (IPR016038)
	Thiolase-like (IPR016039)
	Chalcone/stilbene synthase, active site (IPR018088)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.39,57.13,116.53,171.56,7.73,485.52,1.68,106.38
Arabidopsis thaliana homolog:	AT5G13930.1

Automatic updates:

Name:	NM_001371383 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max chalcone synthase 13 (CHS13), mRNA.
PubMed ID:	30509179 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:34130532..34130980 (- strand)
Length:	449
Type:	three_prime_UTR

Position:	Chr04:34130981..34131978 (- strand)
Length:	998
Type:	CDS

Position:	Chr04:34132450..34132627 (- strand)
Length:	178
Type:	CDS

Position:	Chr04:34132628..34132708 (- strand)
Length:	81
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G232000.01
CCTCACTCAC CTTTCATCTC TCTCACTCAC TCTCTTCTAA CCGCTTTCTC TCCTTTACCT CTGCCATTCA CGCACCTCCA
GATGGTCACA GTCGAGGAAA TCCGCAACTC CCAGCGCTCC CATGGCCCCG CCACCATTCT CGCCTTCGGC ACCGCCACGC
CCTCCAACTG CGTCTCCCAA GAGGATTACC CCGACTACTA CTTCCGCATT ACTAACAGCG AACACATGAC CGACCTCAAG
GAAAAGTTCA AGCGCATGTG TGAAAAGTCG ATGATAAAGA AGCGTTACAT GCACCTGACG GAGGAGTTTC TGAAGGAGAA
TCCAAACATG TGTGCGTACA TGGCGCCGTC GCTTGACGTG AGGCAGGACA TAGTGGTCGT GGAAGTGCCG AAGCTCGGAA
AAGAAGCGGC GAGGAAGGCG ATAAAGGAGT GGGGTCAACC CAAATCAAAG ATCACGCACC TGGTGTTTTG CACCACTTCA
GGCGTCGACA TGCCTGGAGC GGATTACCAG CTCACCAAGC TTCTCGGCCT CAGGCCTTCC GTGAAGCGTC TCATGATGTA
CCAGCAGGGC TGCTTCGCCG GCGGCACCGT GCTCCGTCTC GCCAAGGACC TCGCCGAGAA CAACAAGGGC GCCCGCGTCC
TCGTAGTCTG CTCCGAAATC ACGGCCGTGA CTTTCCGCGG CCCGTCCGAT GCCCACCTCG ACTCCCTCGT CGGCCAGGCT
CTATTCGGGG ACGGCGCGGC CGCGATGATC ATCGGAGCGG ATCCTGACAG AACTGTAGAA CGTCCGATAT TTGAAATGGT
ATCGGCCTCC CAGACCATTC TGCCGGACTC TGACGGTGCC ATCGACGGGC ACTTGAGGGA GGTGGGACTA ACATTTCACC
TCCTGAAAGA CGTGCCCGGA ATCATCTCGA AGAACATTGA GAAGAGTCTG ACGGAGGCGT TTGCGCCGAT TGGGATTAAT
GACTGGAACT CGATCTTTTG GATTGCACAT CCGGGTGGAC CGGCGATTCT GGACCAGGTG GAGGAGAAGC TCCGGCTGAA
ACCGGAGAAA CTCCGGTCCA CTCGGCACGT TCTGAGCGAA TATGGAAACA TGTCAAGTGC ATGTGTTTTG TTCATTCTGG
ATGAAATGAG GAAGAAGTCG AAGGAGGAAG GGAAGGGTAG CACCGGAGAA GGGCTAGAGT GGGGGGTTTT ATTCGGGTTC
GGACCGGGTC TAACCGTTGA GACGGTTGTG CTGCACAGCG TTCCGTTGGA GGGGTGAGTG AACGTGATGG TGATGATATG
AGTGGGTCAT ACTATGGAAA ACTAGTATAT CACTGTATAA TAACTACTAA TAAGGAAAGA CCTCCAGAAT CTGAGGAAAA
GTGTGATTAT GTTAATTAGT GTCAAATTTG ATTAAGAATT GATGTTAGCA TAAAGCATAT TAGTGGAAAG ATGATGGTGT
CTGTGATTGA ACTTGTGAAA GTTTTAGTGC TTAATGCCAT TGAATTTGGT TTTGGTGCTT TTACTCTTAA AATGATCCAT
GGTGTTAGTA ATGTAGCACC AGGTCCTTGG CTCTTTCGTC TTCTCATGTG AACCAATCAT CAAACTACAA TTATTTAAGG
TTATAATTGG ACAACAAAAG CAAACATCTT TTCTCTATAC AGCTATTTTA TAACTTTTTT TATTCAATAG TTTAGTCTAT
ATTTTCATTA AATATCTAGT TATACA

[show][hide][copy]CDS

>Vigan.04G232000.01
ATGGTCACAG TCGAGGAAAT CCGCAACTCC CAGCGCTCCC ATGGCCCCGC CACCATTCTC GCCTTCGGCA CCGCCACGCC
CTCCAACTGC GTCTCCCAAG AGGATTACCC CGACTACTAC TTCCGCATTA CTAACAGCGA ACACATGACC GACCTCAAGG
AAAAGTTCAA GCGCATGTGT GAAAAGTCGA TGATAAAGAA GCGTTACATG CACCTGACGG AGGAGTTTCT GAAGGAGAAT
CCAAACATGT GTGCGTACAT GGCGCCGTCG CTTGACGTGA GGCAGGACAT AGTGGTCGTG GAAGTGCCGA AGCTCGGAAA
AGAAGCGGCG AGGAAGGCGA TAAAGGAGTG GGGTCAACCC AAATCAAAGA TCACGCACCT GGTGTTTTGC ACCACTTCAG
GCGTCGACAT GCCTGGAGCG GATTACCAGC TCACCAAGCT TCTCGGCCTC AGGCCTTCCG TGAAGCGTCT CATGATGTAC
CAGCAGGGCT GCTTCGCCGG CGGCACCGTG CTCCGTCTCG CCAAGGACCT CGCCGAGAAC AACAAGGGCG CCCGCGTCCT
CGTAGTCTGC TCCGAAATCA CGGCCGTGAC TTTCCGCGGC CCGTCCGATG CCCACCTCGA CTCCCTCGTC GGCCAGGCTC
TATTCGGGGA CGGCGCGGCC GCGATGATCA TCGGAGCGGA TCCTGACAGA ACTGTAGAAC GTCCGATATT TGAAATGGTA
TCGGCCTCCC AGACCATTCT GCCGGACTCT GACGGTGCCA TCGACGGGCA CTTGAGGGAG GTGGGACTAA CATTTCACCT
CCTGAAAGAC GTGCCCGGAA TCATCTCGAA GAACATTGAG AAGAGTCTGA CGGAGGCGTT TGCGCCGATT GGGATTAATG
ACTGGAACTC GATCTTTTGG ATTGCACATC CGGGTGGACC GGCGATTCTG GACCAGGTGG AGGAGAAGCT CCGGCTGAAA
CCGGAGAAAC TCCGGTCCAC TCGGCACGTT CTGAGCGAAT ATGGAAACAT GTCAAGTGCA TGTGTTTTGT TCATTCTGGA
TGAAATGAGG AAGAAGTCGA AGGAGGAAGG GAAGGGTAGC ACCGGAGAAG GGCTAGAGTG GGGGGTTTTA TTCGGGTTCG
GACCGGGTCT AACCGTTGAG ACGGTTGTGC TGCACAGCGT TCCGTTGGAG GGGTGA

[show][hide][copy]PROTEIN

>Vigan.04G232000.01
MVTVEEIRNS QRSHGPATIL AFGTATPSNC VSQEDYPDYY FRITNSEHMT DLKEKFKRMC EKSMIKKRYM HLTEEFLKEN
PNMCAYMAPS LDVRQDIVVV EVPKLGKEAA RKAIKEWGQP KSKITHLVFC TTSGVDMPGA DYQLTKLLGL RPSVKRLMMY
QQGCFAGGTV LRLAKDLAEN NKGARVLVVC SEITAVTFRG PSDAHLDSLV GQALFGDGAA AMIIGADPDR TVERPIFEMV
SASQTILPDS DGAIDGHLRE VGLTFHLLKD VPGIISKNIE KSLTEAFAPI GINDWNSIFW IAHPGGPAIL DQVEEKLRLK
PEKLRSTRHV LSEYGNMSSA CVLFILDEMR KKSKEEGKGS TGEGLEWGVL FGFGPGLTVE TVVLHSVPLE G*