GBrowse Details

Vigan.04G232600.01

Basic Information:
Name: Vigan.04G232600.01
Multiple alignment
Variant Information
Position: Chr04:34259460..34263910 (+ strand)
Length: 4451
Functional Information:
Description: Similar to nudix hydrolase 12, mitochondrial-like isoform X2. [XP_004493101.1, Cicer arietinum]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
NUDIX hydrolase, conserved site (IPR020084)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.03,4.26,1.63,7.78,2.14,35.46,1.24
Arabidopsis thaliana homolog: AT1G12880.1
Automatic updates:
Name: NM_001254104 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nudix hydrolase 12, mitochondrial-like (LOC100794003), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001414949 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nudix hydrolase 12, mitochondrial-like (LOC100794003), transcript variant 2, mRNA; nuclear gene for mitochondrial product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:34259460..34259953 (+ strand)
Length: 494
Type: five_prime_UTR
Position: Chr04:34259954..34260024 (+ strand)
Length: 71
Type: CDS
Position: Chr04:34261647..34261758 (+ strand)
Length: 112
Type: CDS
Position: Chr04:34261847..34261930 (+ strand)
Length: 84
Type: CDS
Position: Chr04:34262751..34262900 (+ strand)
Length: 150
Type: CDS
Position: Chr04:34263083..34263361 (+ strand)
Length: 279
Type: CDS
Position: Chr04:34263362..34263910 (+ strand)
Length: 549
Type: three_prime_UTR


>Vigan.04G232600.01
GAATACGAAG GTGAAGAGAT GGTTGCTATA TAAAAGGATG CCATTGCTGC ACCCCGTGAA AGCTCTATCA CTCTCTTTCC
CTATTTTCCG TGGAAGCCAT TCTGCTAAAA CAAGCATATT TTCTTCTAGA TTTCCATCTT TGCAAAAGGG ATAAAGGGTT
GCCACCATTT ATGGTTTGGT TCGGCTATTT GTAGTAACCT TGTGCTATGA AAACAAACAA AACCATTATC ATGAAAGGGT
TCTTGAAACT TTAACACCTG AACCTTCATC TAAACAATTG TTCAACCTAA ACACAGCACC TCGCCTATTA AGCCTCTCTC
ATGCAAGAGA TTCTTTGTGT TCAGGGTTGA GCCTCACCCG TTAACGTTTT CACGCTTTTT GTTTCATCTG TTCCATTTCA
ACCACCCCCA TATTCTAAAG TCACAACCTT GGTTTTGATT CCCCCCTGTT TTCCTTTGTC TGTTTCCACT GCTTTTTGTC
TTTTGCTAGA ACCTATGTCG TCTGTGCCAG CACGAACAGG GCGACAAAGA CAGCGTTATG AAGACAATTT GCGCCTTGTC
TCTGGATGTA TTCCCTATAG ATGGAGAAAG GACAACACAG ATCTAATGGG AGAAACTGAG ATAATGGAAG TACTAATGAT
TTCTTCTCCA AAACGTGATG ACCTTGTATT CCCAAAGGGT GGATGGGAGG ATGATGAGAC TGTCACAGAA GCTGCTTGCC
GCGAAGCTTT AGAAGAAGCA GGAGTTAAAG GAATACTAAG AGAAATTCCA TTAGGAATAT GGGAGTTCAG AAGCAAAAGC
AGTCAAGACT TGTGTAGCAT TGAAGGAGGC TGCAGAGGAT ACATGTTTGC CTTGGAGGTG ACTGAAGAAC TTGAGCATTG
GCCAGAGCAG AAAAATCGTT CTCGCCAATG GTTAAACATA AAAGAGGCAT TCAGACTCAG CAGATATGAC TGGATGTGTA
ATGCACTTGA GGCATTTTTG AGAGTCATGG AAGAGGAGAG AAAGCTTGAT GATGAGAAGC AAGAGCAGAA TACTGAACTT
GAACAACCTT CAATTATGGT AGCAGATGTG TCAGAATGCC AAACTATGTC ACCTAACTGC TATAAAAGAT CCTCTACCAT
GCACATGCCT CCTTCGGTCA ATCTTCTGTC ACGTGCTACT CAAGAGATAG CCATCCACTT TGGTTATTGA CATCACCATG
ACACTTCTGT AAAATGTTCA TGTGTTAGAT CAACATAGTG CGGTAACTCC TTCAAATTGT GAAAGAACAT GTTGTGAAGT
TGTGACTTGG ATGCACATGC CATCATCGAC CTCGTTGCTG TCGGGTTTTT CTTCTTTCTG TCCGATGTGA TCGTGATGTA
AAAATGTGGT GGTGCAAGTC TCAAGTGTAT ATGGACTTGG CAGTTGTTTG ATTCACCCCA CTGAAACTGA AGGCTTGTAA
AAAAGCATCA TTTGTGAAAA CTAGTAGAGT ACAAGGGACA AAGACTATGC TGCTTTTGAC AACCTTCGAT TCATAACCTT
ATAACACGTC ACTTTTCAGA CAGTACCCTT GATTTCGTTC TTAAAATTCT GTTCGGCATG TGCACTATCC TTGGTTACCT
GTTTCAGTGG CTGTGTTTTC TGTGAAGTTC AATGTTTCTC TTACCCATGA AACCGTGCCT TTTGCTCTTT TGATAAATTT
TTCAGGATAT TAAAACTTGA TATCATGATG AAGAACAAAA AGACCTTTTT TTATTTAAA

>Vigan.04G232600.01
ATGTCGTCTG TGCCAGCACG AACAGGGCGA CAAAGACAGC GTTATGAAGA CAATTTGCGC CTTGTCTCTG GATGTATTCC
CTATAGATGG AGAAAGGACA ACACAGATCT AATGGGAGAA ACTGAGATAA TGGAAGTACT AATGATTTCT TCTCCAAAAC
GTGATGACCT TGTATTCCCA AAGGGTGGAT GGGAGGATGA TGAGACTGTC ACAGAAGCTG CTTGCCGCGA AGCTTTAGAA
GAAGCAGGAG TTAAAGGAAT ACTAAGAGAA ATTCCATTAG GAATATGGGA GTTCAGAAGC AAAAGCAGTC AAGACTTGTG
TAGCATTGAA GGAGGCTGCA GAGGATACAT GTTTGCCTTG GAGGTGACTG AAGAACTTGA GCATTGGCCA GAGCAGAAAA
ATCGTTCTCG CCAATGGTTA AACATAAAAG AGGCATTCAG ACTCAGCAGA TATGACTGGA TGTGTAATGC ACTTGAGGCA
TTTTTGAGAG TCATGGAAGA GGAGAGAAAG CTTGATGATG AGAAGCAAGA GCAGAATACT GAACTTGAAC AACCTTCAAT
TATGGTAGCA GATGTGTCAG AATGCCAAAC TATGTCACCT AACTGCTATA AAAGATCCTC TACCATGCAC ATGCCTCCTT
CGGTCAATCT TCTGTCACGT GCTACTCAAG AGATAGCCAT CCACTTTGGT TATTGA

>Vigan.04G232600.01
MSSVPARTGR QRQRYEDNLR LVSGCIPYRW RKDNTDLMGE TEIMEVLMIS SPKRDDLVFP KGGWEDDETV TEAACREALE
EAGVKGILRE IPLGIWEFRS KSSQDLCSIE GGCRGYMFAL EVTEELEHWP EQKNRSRQWL NIKEAFRLSR YDWMCNALEA
FLRVMEEERK LDDEKQEQNT ELEQPSIMVA DVSECQTMSP NCYKRSSTMH MPPSVNLLSR ATQEIAIHFG Y*