VIGGS:GBrowse

Vigan.04G234300.01

Basic Information:

Name:	Vigan.04G234300.01 Multiple alignment Variant Information
Position:	Chr04:34553824..34556134 (+ strand)
Length:	2311

Functional Information:

Description:	Similar to Xyloglucan endotransglucosylase/hydrolase. [V7CWP6, Phaseolus vulgaris]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: cellular glucan metabolic process (GO:0006073)
	Cellular Component: cell wall (GO:0005618)
	Cellular Component: apoplast (GO:0048046)
	Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
	Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro:	Glycoside hydrolase, family 16 (IPR000757)
	Glycoside hydrolase, family 16, active site (IPR008263)
	Concanavalin A-like lectin/glucanases superfamily (IPR008985)
	Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.74,32.36,179.34,5.37,229.84,13.47,44.68,36.47

Automatic updates:

Name:	NM_001255726 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max endo-xyloglucan transferase (XTH1), mRNA.
PubMed ID:	8244968 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:34553824..34554120 (+ strand)
Length:	297
Type:	five_prime_UTR

Position:	Chr04:34554121..34554307 (+ strand)
Length:	187
Type:	CDS

Position:	Chr04:34554478..34554578 (+ strand)
Length:	101
Type:	CDS

Position:	Chr04:34554749..34554942 (+ strand)
Length:	194
Type:	CDS

Position:	Chr04:34555248..34555647 (+ strand)
Length:	400
Type:	CDS

Position:	Chr04:34555648..34556134 (+ strand)
Length:	487
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G234300.01
TTCCAACACA AAATCCTAAC TAAAGCAAAT GCATGATTCT TTGTCTTCAT CTCTCTCTCA TCTGACATAA AACAAATCTT
AAATATATAT CATTAATCAT TATAACAAGC ATAAACTTGA TCGTTTTTGT TAAATGATGA AGCATGTATT ATTGAATTAA
ATATAAATTT ATGTTGAATA TTTAAAAAGA TAGAAAGTAG AGGGAAAGAG AGAGGAAGAA GGGTATTGGG CTAGGTGCAG
TGCTTATATA TACCCTTTTC TTAGCCATTA GCTTCCACAA ACAGATAAAC ACAGAAAATG GTTTCTTCTT TGTGGACCGT
GTCTCTGATA TTGGCATCGC TGGCCTCTGC AGCAGTTTGT GCCAACCCGA GGAGGCCAGT GGATGTACAA TTCGGTAGAA
ACTACGTTCC TACATGGGCT TTTGATCACA TCAAATACTT CAATGGTGGT TCTGAGATTC AGCTTCATCT TGACAAGTAC
ACTGGTACTG GCTTTCAGTC CAAAGGGTCA TACTTGTTTG GCCATTTCAG CATGTACATA AAGATGGTTC CTGGAGATTC
AGCTGGCACA GTCACTGCCT TCTATTTATC TTCTCAAAAC GCGGAGCACG ATGAGATAGA CTTTGAGTTC TTGGGGAACA
GAACAGGACA ACCTTACATT TTGCAAACAA ATGTGTTCAC CGGAGGAAAG GGTGACAGAG AGCAAAGAAT CTATCTCTGG
TTTGACCCCA CCAAAGCATA TCACAGATAC TCTATTCTCT GGAACTTGTA TCAGATTGTG TTCTTTGTTG ACGATGTGCC
GATCAGAGTG TTCAAGAACA GCAAGGACTT GAGAGTGAAG TTTCCATTCG ACCAACCTAT GAAGCTATAC AACAGTTTGT
GGAATGCTGA TGACTGGGCA ACAAGGGGTG GTTTGGAGAA AACAGATTGG TCGAAAGCTC CTTTCGTAGC AGCGTACAAG
GGGTTCCACA TCGATGGGTG CGAGGCCTCT GTGAACGCTA AGTTCTGCGA CACACAGGGC AAGAGATGGT GGGACCAACC
AGAGTTTCGT GACCTTGACG CCGCTCAATG GCAAAGACTC AAATGGGTGC GTCAGAAATT CACCATCTAC AACTACTGCA
CTGACAGAAA ACGCTACCCT CAACTTTCCC CTGAATGCAG TAGAGACCGC GACATTTAAA TTTTCACATA CTTCTGTTAC
CATTTACTTT TACCAGATTG TTGTCACTTT CATGTACAAT TTTATATCAC GTCAAATCTA TCCATTGCCA CTTTATTTAT
GAATTGAAAT TTGCTTCAGA TAAAAAAATA ATAAATAAAC ACAGTTTTTC TTAGAGAAAA AAGGTTTTAA TCTGCATGTT
TATCCTTTGA AGTGCAGCCA CAGGTTTGTG GTATTATTAA TATTATTGTT GCTGGTTTAT TCCACTGGTT CTTGGTGATA
ATAATGACAT CTTGCAGAGC CAGTTGTATA TTTTTTGTAG AGATCTGTGT TCTTTCGGTT TTCTAGGTGA ATCATAGATC
TGCGTTATGA TCTCTGGTCC CGGAAATGTA AAAGTAAAAG TGGTGCTATT CAATATTTTG TTGCGGAAAA GACACTGGAC
CCGTTAACGT GGCACCACTG GGCGAACCCC ATGTGAAGGC CATATCAGAA TTGTCGCAGT AAATAA

[show][hide][copy]CDS

>Vigan.04G234300.01
ATGGTTTCTT CTTTGTGGAC CGTGTCTCTG ATATTGGCAT CGCTGGCCTC TGCAGCAGTT TGTGCCAACC CGAGGAGGCC
AGTGGATGTA CAATTCGGTA GAAACTACGT TCCTACATGG GCTTTTGATC ACATCAAATA CTTCAATGGT GGTTCTGAGA
TTCAGCTTCA TCTTGACAAG TACACTGGTA CTGGCTTTCA GTCCAAAGGG TCATACTTGT TTGGCCATTT CAGCATGTAC
ATAAAGATGG TTCCTGGAGA TTCAGCTGGC ACAGTCACTG CCTTCTATTT ATCTTCTCAA AACGCGGAGC ACGATGAGAT
AGACTTTGAG TTCTTGGGGA ACAGAACAGG ACAACCTTAC ATTTTGCAAA CAAATGTGTT CACCGGAGGA AAGGGTGACA
GAGAGCAAAG AATCTATCTC TGGTTTGACC CCACCAAAGC ATATCACAGA TACTCTATTC TCTGGAACTT GTATCAGATT
GTGTTCTTTG TTGACGATGT GCCGATCAGA GTGTTCAAGA ACAGCAAGGA CTTGAGAGTG AAGTTTCCAT TCGACCAACC
TATGAAGCTA TACAACAGTT TGTGGAATGC TGATGACTGG GCAACAAGGG GTGGTTTGGA GAAAACAGAT TGGTCGAAAG
CTCCTTTCGT AGCAGCGTAC AAGGGGTTCC ACATCGATGG GTGCGAGGCC TCTGTGAACG CTAAGTTCTG CGACACACAG
GGCAAGAGAT GGTGGGACCA ACCAGAGTTT CGTGACCTTG ACGCCGCTCA ATGGCAAAGA CTCAAATGGG TGCGTCAGAA
ATTCACCATC TACAACTACT GCACTGACAG AAAACGCTAC CCTCAACTTT CCCCTGAATG CAGTAGAGAC CGCGACATTT
AA

[show][hide][copy]PROTEIN

>Vigan.04G234300.01
MVSSLWTVSL ILASLASAAV CANPRRPVDV QFGRNYVPTW AFDHIKYFNG GSEIQLHLDK YTGTGFQSKG SYLFGHFSMY
IKMVPGDSAG TVTAFYLSSQ NAEHDEIDFE FLGNRTGQPY ILQTNVFTGG KGDREQRIYL WFDPTKAYHR YSILWNLYQI
VFFVDDVPIR VFKNSKDLRV KFPFDQPMKL YNSLWNADDW ATRGGLEKTD WSKAPFVAAY KGFHIDGCEA SVNAKFCDTQ
GKRWWDQPEF RDLDAAQWQR LKWVRQKFTI YNYCTDRKRY PQLSPECSRD RDI*