VIGGS:GBrowse

Vigan.04G234400.01

Basic Information:

Name:	Vigan.04G234400.01 Multiple alignment Variant Information
Position:	Chr04:34562716..34565326 (- strand)
Length:	2611

Functional Information:

Description:	Similar to Uncharacterized protein. [I1ML66, Glycine max]
GO:	Biological Process: glucose metabolic process (GO:0006006)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
	Molecular Function: NADP binding (GO:0050661)
	Molecular Function: NAD binding (GO:0051287)
InterPro:	Glyceraldehyde-3-phosphate dehydrogenase, type I (IPR006424)
	NAD(P)-binding domain (IPR016040)
	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (IPR020828)
	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (IPR020829)
	Glyceraldehyde 3-phosphate dehydrogenase, active site (IPR020830)
	Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.88,0.79,299.44,3355.83,0.46,476.44,5.12,344.97
Arabidopsis thaliana homolog:	AT1G12900.1, AT1G42970.1, AT3G26650.1

Automatic updates:

Name:	NM_001251555 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max glyceraldehyde-3-phosphate dehydrogenase A subunit (LOC732655), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:34562716..34562955 (- strand)
Length:	240
Type:	three_prime_UTR

Position:	Chr04:34562956..34563458 (- strand)
Length:	503
Type:	CDS

Position:	Chr04:34563606..34563850 (- strand)
Length:	245
Type:	CDS

Position:	Chr04:34564038..34564342 (- strand)
Length:	305
Type:	CDS

Position:	Chr04:34564859..34564975 (- strand)
Length:	117
Type:	CDS

Position:	Chr04:34565096..34565137 (- strand)
Length:	42
Type:	CDS

Position:	Chr04:34565138..34565326 (- strand)
Length:	189
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G234400.01
CACCAATCAC AACCATTCAT TGCATGAGAG GCTATCCATA ATCTCATCCT CACTTACGCT CATGAGTCAC AGCCACACAT
CCACGTTGCC TCCTCTTGCT TCCCTATTAA ACTTTACAAC ACATAACAAC ATGGAACCTC ATTCTACTCT ACTGCTTCAC
TTCTGCTACA CAAAATCCAC TGCTCAAACA TGGCTTCGGC TACTCTCTCT GTAGCCAAAC CAGCTCTTCA GGCAAATGGG
AAAGGCTTCT CTGAGTTCTC TGGTCTTCGC AGCTCATCAA ACCACCTTCC CTTTTCCAGA AAAGCTTCTG AGGATTTCCA
TTCTGTCATT GCCTTCCAGA CTTATGCAGT TGGAAGCAGT GGAGGATACA AGAAGGGTGT GGTGGAAGCA AAATTGAAGG
TTGCCATAAA CGGATTTGGA AGAATTGGAA GGAACTTCTT GAGATGCTGG CACGGTCGTA AAGAGTCCCC TCTTGATGTC
ATTGCCATCA ACGACACTGG TGGTGTGAAA CAAGCCTCTC ACCTCCTCAA GTACGATTCT ATCCTTGGAA CCTTCGATGC
TGATGTCAAG CCTGTGGGCA GTGATATCAT CTCCGTTGAT GGAAAAGAAA TCAAAGTCGT CTCTGACCGT AACCCTGCCA
ACCTTCCTTG GAAGGAGTTG GGGATAGACT TGGTGATTGA AGGAACTGGG GTGTTTGTAG ACAGAGAAGG TGCTGGGAAA
CACATTCAAG CAGGAGCTAA GAAGGTACTC ATCACAGCAC CTGGTAAAGG AGACATCCCC ACCTATGTGG TCGGTGTCAA
TGAATATGAT TACAGCGCAG ATGAACCCAT CATCAGCAAT GCCTCTTGCA CCACTAACTG CCTTGCACCC TTTGTCAAGG
TCCTCGACCA GAAATTCGGT ATCATCAAGG GAACCATGAC AACCACTCAC TCTTACACCG GAGACCAGAG GCTTCTTGAT
GCGAGCCACC GTGACCTAAG GCGTGCTAGG GCCGCAGCTC TGAACATTGT CCCCACTTCA ACCGGAGCAG CAAAGGCGGT
GGCCCTTGTG CTGCCAACCC TGAAAGGGAA ACTGAACGGC ATTGCATTGC GTGTGCCAAC CCCAAATGTT TCAGTAGTGG
ACCTTGTCGT TCAGGTGTCA AAGAAGACCT TTGCAGAAGA AGTGAATGCA GCGTTCAGAG AGAGTGCAGA GAAGGAGCTG
AAGGGAATTC TGTCGGTGTG TGATGAGCCT CTTGTGTCTG TTGACTTCAG GTGCACTGAT GTGTCTTCAA CCGTTGACTC
CTCGTTGACC ATGGTGATGG GAGATGACAT GGTGAAGGTG ATTGCTTGGT ATGACAACGA GTGGGGCTAC TCCCAAAGGG
TTGTGGATTT GGCAGACATT GTTGCCAACA AATGGAAGTG ATGATCAAAG CTCGTTGCTA TTTTATTATG CACCATGCAA
GCCCTTGTAA TTTTGTATGC TACTACAACA CTTGTTGCTT CATTCCTTCT AAACACCTAC TGAGAAACAC AGCCATCAAT
TTTCTCTGCC TTCTCATTGT CCAATAAAAT TCTTACCTTC AAATCTCAAT CTTACACATG CTCGGTTTCA GATATTTTAC
ATTTCTAGAT TCTTTTTCTT TGCAAAACAA TTATAAATGG T

[show][hide][copy]CDS

>Vigan.04G234400.01
ATGGCTTCGG CTACTCTCTC TGTAGCCAAA CCAGCTCTTC AGGCAAATGG GAAAGGCTTC TCTGAGTTCT CTGGTCTTCG
CAGCTCATCA AACCACCTTC CCTTTTCCAG AAAAGCTTCT GAGGATTTCC ATTCTGTCAT TGCCTTCCAG ACTTATGCAG
TTGGAAGCAG TGGAGGATAC AAGAAGGGTG TGGTGGAAGC AAAATTGAAG GTTGCCATAA ACGGATTTGG AAGAATTGGA
AGGAACTTCT TGAGATGCTG GCACGGTCGT AAAGAGTCCC CTCTTGATGT CATTGCCATC AACGACACTG GTGGTGTGAA
ACAAGCCTCT CACCTCCTCA AGTACGATTC TATCCTTGGA ACCTTCGATG CTGATGTCAA GCCTGTGGGC AGTGATATCA
TCTCCGTTGA TGGAAAAGAA ATCAAAGTCG TCTCTGACCG TAACCCTGCC AACCTTCCTT GGAAGGAGTT GGGGATAGAC
TTGGTGATTG AAGGAACTGG GGTGTTTGTA GACAGAGAAG GTGCTGGGAA ACACATTCAA GCAGGAGCTA AGAAGGTACT
CATCACAGCA CCTGGTAAAG GAGACATCCC CACCTATGTG GTCGGTGTCA ATGAATATGA TTACAGCGCA GATGAACCCA
TCATCAGCAA TGCCTCTTGC ACCACTAACT GCCTTGCACC CTTTGTCAAG GTCCTCGACC AGAAATTCGG TATCATCAAG
GGAACCATGA CAACCACTCA CTCTTACACC GGAGACCAGA GGCTTCTTGA TGCGAGCCAC CGTGACCTAA GGCGTGCTAG
GGCCGCAGCT CTGAACATTG TCCCCACTTC AACCGGAGCA GCAAAGGCGG TGGCCCTTGT GCTGCCAACC CTGAAAGGGA
AACTGAACGG CATTGCATTG CGTGTGCCAA CCCCAAATGT TTCAGTAGTG GACCTTGTCG TTCAGGTGTC AAAGAAGACC
TTTGCAGAAG AAGTGAATGC AGCGTTCAGA GAGAGTGCAG AGAAGGAGCT GAAGGGAATT CTGTCGGTGT GTGATGAGCC
TCTTGTGTCT GTTGACTTCA GGTGCACTGA TGTGTCTTCA ACCGTTGACT CCTCGTTGAC CATGGTGATG GGAGATGACA
TGGTGAAGGT GATTGCTTGG TATGACAACG AGTGGGGCTA CTCCCAAAGG GTTGTGGATT TGGCAGACAT TGTTGCCAAC
AAATGGAAGT GA

[show][hide][copy]PROTEIN

>Vigan.04G234400.01
MASATLSVAK PALQANGKGF SEFSGLRSSS NHLPFSRKAS EDFHSVIAFQ TYAVGSSGGY KKGVVEAKLK VAINGFGRIG
RNFLRCWHGR KESPLDVIAI NDTGGVKQAS HLLKYDSILG TFDADVKPVG SDIISVDGKE IKVVSDRNPA NLPWKELGID
LVIEGTGVFV DREGAGKHIQ AGAKKVLITA PGKGDIPTYV VGVNEYDYSA DEPIISNASC TTNCLAPFVK VLDQKFGIIK
GTMTTTHSYT GDQRLLDASH RDLRRARAAA LNIVPTSTGA AKAVALVLPT LKGKLNGIAL RVPTPNVSVV DLVVQVSKKT
FAEEVNAAFR ESAEKELKGI LSVCDEPLVS VDFRCTDVSS TVDSSLTMVM GDDMVKVIAW YDNEWGYSQR VVDLADIVAN
KWK*