VIGGS:GBrowse

Vigan.04G235300.01

Basic Information:

Name:	Vigan.04G235300.01 Multiple alignment Variant Information
Position:	Chr04:34720730..34723429 (+ strand)
Length:	2700

Functional Information:

Description:	Similar to Flowering locus T-like protein 2. [E3NYP2, Glycine max]
InterPro:	Phosphatidylethanolamine-binding, conserved site (IPR001858)
InterPro:	Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.03,2.94,0.00,1.71,0.00,0.00

Automatic updates:

Name:	GU065341 NCBI(nuccore)
Organism:	Medicago truncatula
Description:	Medicago truncatula cultivar Jemalong6 FTa mRNA, partial cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001253077 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein FLOWERING LOCUS T-like (FT3A), mRNA.
PubMed ID:	30894121 NCBI(pubmed)
	29120038 NCBI(pubmed)
	28338712 NCBI(pubmed)
	20864544 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001255750 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein FLOWERING LOCUS T-like (FT3B), mRNA.
PubMed ID:	30894121 NCBI(pubmed)
	29120038 NCBI(pubmed)
	28338712 NCBI(pubmed)
	20864544 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:34720730..34720841 (+ strand)
Length:	112
Type:	five_prime_UTR

Position:	Chr04:34720842..34721042 (+ strand)
Length:	201
Type:	CDS

Position:	Chr04:34721223..34721284 (+ strand)
Length:	62
Type:	CDS

Position:	Chr04:34721378..34721418 (+ strand)
Length:	41
Type:	CDS

Position:	Chr04:34723028..34723251 (+ strand)
Length:	224
Type:	CDS

Position:	Chr04:34723252..34723429 (+ strand)
Length:	178
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G235300.01
TAAGAATATC TCATTCCTTG TCCTTCACTC TATAAATAGC TACCATTGTG GGTGTAGTAA ATGTGTGTGA GCCAAAGGCA
TATCTGTGTT TAGCAGTGAG TTACAGTTAG CCATGCCTAG TACTAGTAGG AATCCTCTTG TGGTTGGGCG TGTTATAGGG
GAAGTTATAG ACCCCTTTGA ATGTTCCATT CCTTTTAGGG TCTCCTATGG CAATAGAGAG GTCAACAATG GTTGTGAGCT
TAAACCTTCC CAAGTTGTAA ACCAACCCAG AGTGACTGTT GGTGGAGATG ATCTCAGGAA CTTCTATACT CTGGTGTTGG
TAGATCCTGA TGCTCCCAGC CCTAGTAACC CTAATTCCAG GGAGTACCTT CATTGGTTGG TGACTGATAT TCCAGCAACT
ACCGGCGCTA GTTTTGGTAA CGAGGTTGTA AGTTATGAAA GTCCACGACC AACTATGGGG ATTCATCGTT TCGTGTTTGT
GTTGTTCCGT CAACAGTATC GACAGAGAGT GTATGCTCCT GGATGGCGCC AGAATTTCAA CACCAGAGAA TTTGCTGAAC
TTTACAACCT TGGATTGCCA GCTGCTGCAG TGTTCTTCAA CTGTCAGAGG GAAACTGGTT CTGGTGGTAG GACATTTTGA
AAGCTTCCTT GTACCAAAAG TGCATGTTTG GTCAATATGA AACACCTAAA TAAAGAAACC TACGCAATAT ATATGTAACA
ACAATAGTAT CACACATTAG GTCATACGAT TATGTAACCA AAGCACTATA TATGTACCAC TTTATGTTTT AATATATTTA
TATACAAATA AATTTGGA

[show][hide][copy]CDS

>Vigan.04G235300.01
ATGCCTAGTA CTAGTAGGAA TCCTCTTGTG GTTGGGCGTG TTATAGGGGA AGTTATAGAC CCCTTTGAAT GTTCCATTCC
TTTTAGGGTC TCCTATGGCA ATAGAGAGGT CAACAATGGT TGTGAGCTTA AACCTTCCCA AGTTGTAAAC CAACCCAGAG
TGACTGTTGG TGGAGATGAT CTCAGGAACT TCTATACTCT GGTGTTGGTA GATCCTGATG CTCCCAGCCC TAGTAACCCT
AATTCCAGGG AGTACCTTCA TTGGTTGGTG ACTGATATTC CAGCAACTAC CGGCGCTAGT TTTGGTAACG AGGTTGTAAG
TTATGAAAGT CCACGACCAA CTATGGGGAT TCATCGTTTC GTGTTTGTGT TGTTCCGTCA ACAGTATCGA CAGAGAGTGT
ATGCTCCTGG ATGGCGCCAG AATTTCAACA CCAGAGAATT TGCTGAACTT TACAACCTTG GATTGCCAGC TGCTGCAGTG
TTCTTCAACT GTCAGAGGGA AACTGGTTCT GGTGGTAGGA CATTTTGA

[show][hide][copy]PROTEIN

>Vigan.04G235300.01
MPSTSRNPLV VGRVIGEVID PFECSIPFRV SYGNREVNNG CELKPSQVVN QPRVTVGGDD LRNFYTLVLV DPDAPSPSNP
NSREYLHWLV TDIPATTGAS FGNEVVSYES PRPTMGIHRF VFVLFRQQYR QRVYAPGWRQ NFNTREFAEL YNLGLPAAAV
FFNCQRETGS GGRTF*