VIGGS:GBrowse

Vigan.04G235800.01

Basic Information:

Name:	Vigan.04G235800.01 Multiple alignment Variant Information
Position:	Chr04:34762448..34765565 (+ strand)
Length:	3118

Functional Information:

Description:	Similar to Uncharacterized protein. [G7Z0A6, Glycine max]
InterPro:	Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,96.34,0.00,0.00,0.03,0.05

Automatic updates:

Name:	NM_001253065 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein FLOWERING LOCUS T-like (GMFT5A), mRNA.
PubMed ID:	29120038 NCBI(pubmed)
	27422993 NCBI(pubmed)
	20864544 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001254595 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein FLOWERING LOCUS T-like (FT5B), mRNA.
PubMed ID:	30894121 NCBI(pubmed)
	29120038 NCBI(pubmed)
	28338712 NCBI(pubmed)
	20864544 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:34762448..34762479 (+ strand)
Length:	32
Type:	five_prime_UTR

Position:	Chr04:34762480..34762674 (+ strand)
Length:	195
Type:	CDS

Position:	Chr04:34762779..34762840 (+ strand)
Length:	62
Type:	CDS

Position:	Chr04:34764241..34764281 (+ strand)
Length:	41
Type:	CDS

Position:	Chr04:34764975..34765195 (+ strand)
Length:	221
Type:	CDS

Position:	Chr04:34765196..34765565 (+ strand)
Length:	370
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G235800.01
CAAACAGAAA ACAAGCATAT ATCTTGTATA TCATGGCACG AGAGGATCCT CTTTCTATTG GTGGTGTGAT AGGGGATGTT
CTGAACCCTT TTACAAGCTC AGTTTCTCTC ACAATTTCCA TCAACAACAG AGCGATTAGC AATGGCTATG AACTGAGGCC
CTCTCACGTT GTTAACCGCC CTAGAGTTAC TGTAGGTGGT GAAGACCTAA GGACCTTCTA CACTCTGGTT CTGGTAGATG
CAGATGCACC TAGCCCTAGT AACCCCGTCT TGAGGGAATA CCTCCACTGG ATGGTGACAG ATATTCCAGC AACCACAAAT
GCAAGCTTTG GTAGGGAGGT TGTGGTTTAT GAGAGTCCAC AACCTTCAGC AGGGATTCAT CGACTTGTGT TTGTGTTGTT
CCAGCAATTG GGCAGAGACA CTGTCATCAG CCCAGAACTT CGTCATAATT TCAATTCCAG AAACTTTGCT GAAAATAATA
ACCTCACACC TGTTGCAGCA GCTTATGTCA ACTGCCAAAG AGAGCGTGGG TGCGGTGGAA GGAGGTACTA ACTTCAGTAA
GGAATTTCGA GAACGTGTTA AGTAATTAAT ATGATATATA ATGTCAAATA AAGAAAAATA ATAGGTGTTT AGAGCAATAG
TTAGCACACC ACTATCAGTT AATGAGAGAA AAATAACAAG TTAGAAATAA ATAAATAAAT AAAATCTCTC TTTTTAAAGA
ATTACAGAAG GTTATCTTCA ATACTAGAGT CTATCATTCA GATACTTCAA CAGATTATGG CTGCAACTGA AGAAAAAAGA
AGAAAAAAAG TGTATGCATG GCTCGTACCT ACTGCGACTT GATCCAGTAA TATTATAATA TTAAGAGTCT TTTGTTTTGA
ATAAGGCTTG CTTCAATAAA CTACACACGT TATTACTACC A

[show][hide][copy]CDS

>Vigan.04G235800.01
ATGGCACGAG AGGATCCTCT TTCTATTGGT GGTGTGATAG GGGATGTTCT GAACCCTTTT ACAAGCTCAG TTTCTCTCAC
AATTTCCATC AACAACAGAG CGATTAGCAA TGGCTATGAA CTGAGGCCCT CTCACGTTGT TAACCGCCCT AGAGTTACTG
TAGGTGGTGA AGACCTAAGG ACCTTCTACA CTCTGGTTCT GGTAGATGCA GATGCACCTA GCCCTAGTAA CCCCGTCTTG
AGGGAATACC TCCACTGGAT GGTGACAGAT ATTCCAGCAA CCACAAATGC AAGCTTTGGT AGGGAGGTTG TGGTTTATGA
GAGTCCACAA CCTTCAGCAG GGATTCATCG ACTTGTGTTT GTGTTGTTCC AGCAATTGGG CAGAGACACT GTCATCAGCC
CAGAACTTCG TCATAATTTC AATTCCAGAA ACTTTGCTGA AAATAATAAC CTCACACCTG TTGCAGCAGC TTATGTCAAC
TGCCAAAGAG AGCGTGGGTG CGGTGGAAGG AGGTACTAA

[show][hide][copy]PROTEIN

>Vigan.04G235800.01
MAREDPLSIG GVIGDVLNPF TSSVSLTISI NNRAISNGYE LRPSHVVNRP RVTVGGEDLR TFYTLVLVDA DAPSPSNPVL
REYLHWMVTD IPATTNASFG REVVVYESPQ PSAGIHRLVF VLFQQLGRDT VISPELRHNF NSRNFAENNN LTPVAAAYVN
CQRERGCGGR RY*