GBrowse Details

Vigan.04G236100.01

Basic Information:
Name: Vigan.04G236100.01
Multiple alignment
Variant Information
Position: Chr04:34811914..34815462 (+ strand)
Length: 3549
Functional Information:
Description: Similar to uncharacterized protein. [C6TJL0, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.74,10.43,53.83,51.63,79.51,82.81,105.19,26.38
Automatic updates:
Name: NM_001255806 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin SIP1-4 (SIP1-4), mRNA.
PubMed ID: 30634702 NCBI(pubmed)
Status: Known Variant
Name: NM_001289293 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin SIP1-3 (SIP1-3), mRNA.
PubMed ID: 30634702 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:34811914..34812249 (+ strand)
Length: 336
Type: five_prime_UTR
Position: Chr04:34812250..34812564 (+ strand)
Length: 315
Type: CDS
Position: Chr04:34813594..34813866 (+ strand)
Length: 273
Type: CDS
Position: Chr04:34814981..34815139 (+ strand)
Length: 159
Type: CDS
Position: Chr04:34815140..34815462 (+ strand)
Length: 323
Type: three_prime_UTR


>Vigan.04G236100.01
AACAAACCAG ATGGTACCGG TTACCGCAGG TTGTTTTGGC GGAGCCTATC TGTTTTCGGG TACGCTCCAT GTTGGACGGC
ACCTACCACT GATTAGGTGA ATCACTCGCA TTTTCTTCTA TACTCTCCAT CAACATCAAA GATCCATGCT TTCTTAATTA
TCCCCTAACT CTATCTCCCA TTCATCCTCA CAAACACCTT TTCTTCTCTT TCTCCCTCTG CTATCGCCAC TGCTTCATCA
CTCACCGGTG CCACTATCAC CGGTTGAGTG ACGCATAGCT TCTCCAATTC TACGTTTTCT CTTCAATTTT CCAAAGGGGT
GAAGAAAAAA TCAAAGATGG TTGGTGCCAT AAAAGCTGCG ATTGGAGACG GGGTGTTGAC TTTCATGTGG GTGTTTTGTT
CTTCTCTGTT GGGGATTGCT TCTGGGTACG TAACTAAAGC CCTTAACCTT CAAGACATCT CCTACAACGG GTTCCCTTAC
CCTTCTCTCA TTGTCACCAT TACCCTCGTT TTTGTACTTG TTTTCCTTTT CACCCTCATC GGCAATGCCC TCGGTGGCGC
CAGCTTCAAC CCCACCGGCA CCGCTTCCTT TTACGCCGTT GGTCTCGGCT CTGATACGCT CCTCTCAATG GCGCTTCGTT
TCCCTGCCCA GGCAGTTGGT GCTGCTGGTG GTGCAATGGC AATTATGGAA GTGGTTCCTC AAAAGTATAG GCATATGATT
GGAGGTCCTT CTCTGAAAGT GGATTTGCAT ACTGGGGCTG TTGTTGAAGG GGTGTTGACC TTTTTTATTA CCTTTATCGT
TCTCTTCATC TTCCTCAAGG GCCCTCGTAG TGATTTGTTG AAGATCTGGT TTCTAGCCAC AGCAACTGTA GTTTTGGTCA
TGGTTGGATC TGCCTACACT GGCCCAGCCA TGAATCCTGC CAATGCTTTT GGTTGGGCTT ACTTAAACAA TTGGCACAAC
ACATGGGACC AATTGTATGT ATACTGGATT TGCCCCTTTG CCGGAGCAAT ATTGGCAGCA TGGTTGTTCC GTGCAATCTT
TCCCCCACCA CCACCGCCAG AACTCAAACA AAAGAAAGCA TGAAGAAGGA TTCGGTCATT TGCTTCTTCA TTTCAATTGT
TAAGCACAAT GTTACTGCTG CATTACCCTT TTAATCTATA TATCTCCTTC TTCATTCTCT TTTCTGTTAC TGGGTTATGT
TTAGTCCGTA AATGCAGTAT CCTCGTAGAA AAAATAATGT AGAATTTCCG TATCTGTACT GGATACTGAT TTAATTAACA
TTAATGTTAT TCCTTTCTAG CAAAAAAACC AATTATGTTT TGGTGAATAA TGTACCATGA ATTTAATTTA ACATGCTATA
TTTTGTTTCT TTTCTAAGCT ATGAGGAAGG ATCAAGTCGA ACTAAA

>Vigan.04G236100.01
ATGGTTGGTG CCATAAAAGC TGCGATTGGA GACGGGGTGT TGACTTTCAT GTGGGTGTTT TGTTCTTCTC TGTTGGGGAT
TGCTTCTGGG TACGTAACTA AAGCCCTTAA CCTTCAAGAC ATCTCCTACA ACGGGTTCCC TTACCCTTCT CTCATTGTCA
CCATTACCCT CGTTTTTGTA CTTGTTTTCC TTTTCACCCT CATCGGCAAT GCCCTCGGTG GCGCCAGCTT CAACCCCACC
GGCACCGCTT CCTTTTACGC CGTTGGTCTC GGCTCTGATA CGCTCCTCTC AATGGCGCTT CGTTTCCCTG CCCAGGCAGT
TGGTGCTGCT GGTGGTGCAA TGGCAATTAT GGAAGTGGTT CCTCAAAAGT ATAGGCATAT GATTGGAGGT CCTTCTCTGA
AAGTGGATTT GCATACTGGG GCTGTTGTTG AAGGGGTGTT GACCTTTTTT ATTACCTTTA TCGTTCTCTT CATCTTCCTC
AAGGGCCCTC GTAGTGATTT GTTGAAGATC TGGTTTCTAG CCACAGCAAC TGTAGTTTTG GTCATGGTTG GATCTGCCTA
CACTGGCCCA GCCATGAATC CTGCCAATGC TTTTGGTTGG GCTTACTTAA ACAATTGGCA CAACACATGG GACCAATTGT
ATGTATACTG GATTTGCCCC TTTGCCGGAG CAATATTGGC AGCATGGTTG TTCCGTGCAA TCTTTCCCCC ACCACCACCG
CCAGAACTCA AACAAAAGAA AGCATGA

>Vigan.04G236100.01
MVGAIKAAIG DGVLTFMWVF CSSLLGIASG YVTKALNLQD ISYNGFPYPS LIVTITLVFV LVFLFTLIGN ALGGASFNPT
GTASFYAVGL GSDTLLSMAL RFPAQAVGAA GGAMAIMEVV PQKYRHMIGG PSLKVDLHTG AVVEGVLTFF ITFIVLFIFL
KGPRSDLLKI WFLATATVVL VMVGSAYTGP AMNPANAFGW AYLNNWHNTW DQLYVYWICP FAGAILAAWL FRAIFPPPPP
PELKQKKA*