GBrowse Details

Vigan.04G237200.01

Basic Information:
Name: Vigan.04G237200.01
Multiple alignment
Variant Information
Position: Chr04:34922857..34926633 (+ strand)
Length: 3777
Functional Information:
Description: Similar to Apyrase. [Q5NT85, Vigna unguiculata subsp. unguiculata]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Nucleoside phosphatase GDA1/CD39 (IPR000407)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.03,22.92,37.09,48.55,46.75,6.68,1.07
Automatic updates:
Name: NM_001353363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ecto-apyrase GS52 (GS52), mRNA.
PubMed ID: 21346172 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:34922857..34922939 (+ strand)
Length: 83
Type: five_prime_UTR
Position: Chr04:34922940..34923215 (+ strand)
Length: 276
Type: CDS
Position: Chr04:34923309..34923437 (+ strand)
Length: 129
Type: CDS
Position: Chr04:34923902..34923958 (+ strand)
Length: 57
Type: CDS
Position: Chr04:34924048..34924140 (+ strand)
Length: 93
Type: CDS
Position: Chr04:34924766..34924971 (+ strand)
Length: 206
Type: CDS
Position: Chr04:34925149..34925240 (+ strand)
Length: 92
Type: CDS
Position: Chr04:34925346..34925560 (+ strand)
Length: 215
Type: CDS
Position: Chr04:34925658..34925847 (+ strand)
Length: 190
Type: CDS
Position: Chr04:34925949..34926091 (+ strand)
Length: 143
Type: CDS
Position: Chr04:34926092..34926633 (+ strand)
Length: 542
Type: three_prime_UTR


>Vigan.04G237200.01
AACAAACATT ACCCTAGACT TTGTCTATTT ATATGTTTGA GAGTGAATGT TGCAGCGTTG AGAGTTAGTT GACTGGTTTG
AGAATGGTTT TGGTGTGGTC AAGAAAAGGG ACAAAGAACA TGGACTTAAC TCTCTTTTCA CTTCTATTCT TGTTACTATT
GCCTGCACTC TCTTCTTCCA TATATGTTGG GAACAATATC TTGTTCAATC ATCGCAAGAT ATTCCCCAAA CAACAAGAAC
TTACTTCGTA CGCTGTGATC TTTGATGCCG GTAGCACTGG TAGCCGTGTC CATGTCTTTC ATTTCGACCA GAACTTAGAT
CTTCTTCACA TAGGCAACGA GATTGAGTTT TATGATAAGG TGACACCTGG TTTGAGTGCA TATGCGGATA ATCCTGAAAA
TGCAGCAAAA TCTCTGCTTC CACTTTTGGA GGAAGCTGAA AGTGTTGTCC CTGAGCACCT CTACCCCACC ACACCTGTTA
AACTTGGGGC GACTGCAGGT CTAAGGCTTT TGGATGGGGA TGCTTCTGAA AGGATATTGC AAGCGGTTAG CGATTTGCTC
AAGAACAGAA GTACCTTCAG CGTTCAACCA GATGCTGTAG CTATAATTGA TGGAACCCAA GAAGGTTCTT ATCTATGGGT
GACAGTAAAC TATTTACTAG GGAATTTGGG GAAGAATTTT TCAAAGACAG TGGGAGTAGT TGATCTTGGA GGTGGATCGG
TTCAAATGAC ATATGCTGTC TCAAAGAACA CAGCAAACAA TGCTCCACAA CCACCAGAAG GAGAGGAACC TTACATAAAG
AAACTTGTCC TCAAGGGAAA GAAATATGAC CTCTATGTTC ACAGTTACTT GCGCTATGGT AGAGAGGCAT TTCGTGCTGA
GGTTTTGAAG GTCACTGATG GTTCTGCTAA CCCTTGTATT TTATATGGCT TTGATGGGAC CTACACATAT TCTGGAGAAG
ACTATAAGGC CTTTGCTCCC ATTTCTGGAT CCAACTACCA TGAATGCAGA AAGATAGCTC TTCAAGCTCT GAAAGTGAAC
CAGTTTTGCC CCCACCGAAA TTGTAGTTTT GGAGGGATAT GGGATGGTGG AAAGGGAAGT GGACAAAACA TTCTTTTCGG
CACTTCATCT TTCTATTATC TGCCTTCGGA GATTGGTATG TTTAATCCAA ATAAACCCAA CTCCAAGATT CATCCTTTGG
ATTTGAAGAC TGAAGCAAAG AGAGCTTGTG AAACAACATT TGAGGATGCC AAATACACTT ATCCACTTCT TTCAGCTGAT
AAACTTCCAT ATGTATGCTT GGACCTTACA TACCAGTATG CATTGTTTAC TGATGGATTT GGCTTAGATC CATTGCAAGA
GATCACAATG GCAAATCAAA TTGAATATCA GGAAGCACTT GTGGAAGCAG CATGGCCTTT AGGCACTGCC ATAGAAGCCA
TATCTTCATT GCCTAAATTT GATCCATTCA TGTATTTTAT TTAAGTGCTG GCATATTTCA GTGCTAAAGG GCACTATAAA
AACCTACTGA ATAAAATATT AAAACTTAAG CCATTTCTTC ATACAGAGAA AGAAATATTC TTATTTTTAT GTCGATTTGA
AGATTTTATG GGAAGAATTG GAATCTTTAA GGACAATACC AAAAACTACA CATGCAACAC CAAATGAAAC CATGATCTTG
TAAAAGTCAT GGTTAAATAT AAAGATTCTA AATATGTCAT GCTTCTTGAA AAGTCCTGGG GAAATGTTTG TTGCTTTCAA
GACGAAAATC CTTTTAACAT TAATCATGTC TTTCCCCTGG TGCTTCAACA AATCACTACT ACAAACTCGG ATGCAAGATT
CCAACCAAAA TCAAAACAAG TCCAACTTCT CTTGGAAATG CTACAAGACT AAATGATTAA CTTTTCACAC AGCATCAATT
AGATTAAAGG GTACATTGGT GAGTCTTCCA CTCAATAACC TGGAAAAGGT AAAACCACTG AATATTCTTG GATGTTGGAT
AAAGGGGCCA CTAATATCTA TAAAAT

>Vigan.04G237200.01
ATGGTTTTGG TGTGGTCAAG AAAAGGGACA AAGAACATGG ACTTAACTCT CTTTTCACTT CTATTCTTGT TACTATTGCC
TGCACTCTCT TCTTCCATAT ATGTTGGGAA CAATATCTTG TTCAATCATC GCAAGATATT CCCCAAACAA CAAGAACTTA
CTTCGTACGC TGTGATCTTT GATGCCGGTA GCACTGGTAG CCGTGTCCAT GTCTTTCATT TCGACCAGAA CTTAGATCTT
CTTCACATAG GCAACGAGAT TGAGTTTTAT GATAAGGTGA CACCTGGTTT GAGTGCATAT GCGGATAATC CTGAAAATGC
AGCAAAATCT CTGCTTCCAC TTTTGGAGGA AGCTGAAAGT GTTGTCCCTG AGCACCTCTA CCCCACCACA CCTGTTAAAC
TTGGGGCGAC TGCAGGTCTA AGGCTTTTGG ATGGGGATGC TTCTGAAAGG ATATTGCAAG CGGTTAGCGA TTTGCTCAAG
AACAGAAGTA CCTTCAGCGT TCAACCAGAT GCTGTAGCTA TAATTGATGG AACCCAAGAA GGTTCTTATC TATGGGTGAC
AGTAAACTAT TTACTAGGGA ATTTGGGGAA GAATTTTTCA AAGACAGTGG GAGTAGTTGA TCTTGGAGGT GGATCGGTTC
AAATGACATA TGCTGTCTCA AAGAACACAG CAAACAATGC TCCACAACCA CCAGAAGGAG AGGAACCTTA CATAAAGAAA
CTTGTCCTCA AGGGAAAGAA ATATGACCTC TATGTTCACA GTTACTTGCG CTATGGTAGA GAGGCATTTC GTGCTGAGGT
TTTGAAGGTC ACTGATGGTT CTGCTAACCC TTGTATTTTA TATGGCTTTG ATGGGACCTA CACATATTCT GGAGAAGACT
ATAAGGCCTT TGCTCCCATT TCTGGATCCA ACTACCATGA ATGCAGAAAG ATAGCTCTTC AAGCTCTGAA AGTGAACCAG
TTTTGCCCCC ACCGAAATTG TAGTTTTGGA GGGATATGGG ATGGTGGAAA GGGAAGTGGA CAAAACATTC TTTTCGGCAC
TTCATCTTTC TATTATCTGC CTTCGGAGAT TGGTATGTTT AATCCAAATA AACCCAACTC CAAGATTCAT CCTTTGGATT
TGAAGACTGA AGCAAAGAGA GCTTGTGAAA CAACATTTGA GGATGCCAAA TACACTTATC CACTTCTTTC AGCTGATAAA
CTTCCATATG TATGCTTGGA CCTTACATAC CAGTATGCAT TGTTTACTGA TGGATTTGGC TTAGATCCAT TGCAAGAGAT
CACAATGGCA AATCAAATTG AATATCAGGA AGCACTTGTG GAAGCAGCAT GGCCTTTAGG CACTGCCATA GAAGCCATAT
CTTCATTGCC TAAATTTGAT CCATTCATGT ATTTTATTTA A

>Vigan.04G237200.01
MVLVWSRKGT KNMDLTLFSL LFLLLLPALS SSIYVGNNIL FNHRKIFPKQ QELTSYAVIF DAGSTGSRVH VFHFDQNLDL
LHIGNEIEFY DKVTPGLSAY ADNPENAAKS LLPLLEEAES VVPEHLYPTT PVKLGATAGL RLLDGDASER ILQAVSDLLK
NRSTFSVQPD AVAIIDGTQE GSYLWVTVNY LLGNLGKNFS KTVGVVDLGG GSVQMTYAVS KNTANNAPQP PEGEEPYIKK
LVLKGKKYDL YVHSYLRYGR EAFRAEVLKV TDGSANPCIL YGFDGTYTYS GEDYKAFAPI SGSNYHECRK IALQALKVNQ
FCPHRNCSFG GIWDGGKGSG QNILFGTSSF YYLPSEIGMF NPNKPNSKIH PLDLKTEAKR ACETTFEDAK YTYPLLSADK
LPYVCLDLTY QYALFTDGFG LDPLQEITMA NQIEYQEALV EAAWPLGTAI EAISSLPKFD PFMYFI*