GBrowse Details

Vigan.04G237300.01

Basic Information:
Name: Vigan.04G237300.01
Multiple alignment
Variant Information
Position: Chr04:34955955..34958217 (+ strand)
Length: 2263
Functional Information:
Description: Similar to Transcriptional factor NAC11. [B9U5I1, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.35,0.67,18.14,67.75,8.73,10.66,1.31,3.61
Arabidopsis thaliana homolog: AT3G04070.1
Automatic updates:
Name: NM_001249213 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcriptional factor NAC11 (NAC11), mRNA.
PubMed ID: 30619426 NCBI(pubmed)
21707801 NCBI(pubmed)
Status: Known Variant
Name: NM_001251132 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC domain protein (NAC12), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:34955955..34956290 (+ strand)
Length: 336
Type: five_prime_UTR
Position: Chr04:34956291..34956453 (+ strand)
Length: 163
Type: CDS
Position: Chr04:34956646..34956944 (+ strand)
Length: 299
Type: CDS
Position: Chr04:34957151..34957741 (+ strand)
Length: 591
Type: CDS
Position: Chr04:34957742..34958217 (+ strand)
Length: 476
Type: three_prime_UTR


>Vigan.04G237300.01
AATTGGGCCA TTATCGAGTG AGAAAGTTTG TCTTGGTAGA TGGCTGTTGT TGTGGCTAGC CATCACCAAT TCCTCATTTC
TTAGCTCACT TTAATGGTCC CCACTTGCAA ATTTCTTGAA CTCATCTCTT CTTCTCTCGT TCATGCCCCC TTCCCATCTC
AACCTAATCT CTTTCCACAT GGCGACAAAA TCCCACAACC ATAAAATCCC CTCTCTTCTC CCCATCCCAA AAATTTCAAT
CCTCTCTTTC CCTCTTTTGC ATGCCTTTTT CAACCACCCT TTAGCCATTT CTCTTCTTTT TCTCTCTTCA TTCTCTCCCT
CACCAACCCC CACATAATGG GAAGCCCTCA ATCCAATTTG CCACCTGGTT TTAGGTTCCA CCCAACAGAT GAAGAACTCA
TTCTTCACTA CCTTAGTAAA AGGGTTGCAT CCATTCCCTT ACCCGTTTCC ATCATTGCTG AGGTTGATAT CTACAAGTTA
GATCCATGGG ACTTGCCAGC AAAGGCAACC TTTGGGGAGA AAGAATGGTA CTTTTTCAGT CCCAGAGACC GGAAGTACCC
AAACGGTGCA AGGCCAAACA GGGCAGCTGC TTCAGGGTAT TGGAAGGCCA CTGGCACAGA TAAGACCATA GTCACATCAT
TGCAGGGTGG ATCAGTCCAA GAGAACATTG GTGTGAAGAA GGCTTTGGTG TTCTACAAAG GAAGACCCCC AAAGGGTGTC
AAGACCAATT GGATCATGCA TGAATATCGC CTTGTAGACA ACAACAAACC CATTAAGCTC AAAGACTCCT CCATGAGATT
GGACGATTGG GTGCTGTGTC GGATTTACAA GAAGTCCAAA CATGCTCTAA CTTCAACAGA GGCAGGAATA GGAGTTGGTG
AGGTGGATCA AGCAGAGGAG CAGCAATTCA ATGAGACCCT TTTGCCAATC TTAAAATCTC CAATACCTCC TCCTCAGAAC
ACATTGATGT CTCAAAAATC TGTCTCCTTC TCCAACCTGT TGGATGCCAT GGACTACTCT GTACTCAGCA GTTTCTTATC
TGAGAACCAT TCCAACCCAC CAGGGATCGG ATCAAGTGCA GGCTTCAACA CTGAGAATTT GGAACAGCAA TCTTCTCCGA
TGAACAACCC CAACAATAGC TACACGTTTC AGAAGAACAC CCAATTGAAC CCTTCACTCT CCAACATGGA AAACATGAGG
CCAAAGCGCC AATTTTCAAG CATTGATGAT GAAACTCTGT ACCCATCCAA GAAATACCTG ACTTCCTCTT GCAACTTTCC
TTCCCACATC AACCCCCAAT ACGAGAATCC ACAATGGAAC TACCTCGTCA AACAGTCTTT GCTGAATCAG CGGTTACTGC
TTGGTCCTCA GCTTCAATTT CAAGGATAAT CCAAACATAC CAACAACTTA TTAAATCAGA AAAAAACAAA ATTGAAATAG
AAAAATTACA TAGAAGTAAA ATATTCAAAA GCTGAGCCCA CCAAAGAACA CACCAATTTG ATCACTAGAT AAGAAGGTTT
AGTAATTTAG CACATAGATA TTGTTATAGC GTTTTTTTTT TTTTTGGTTT TCTTTTAATT AATTTGTGCT GGAAAACGAA
GAATAGAAGG TAGCTTGAAA GGAGTAACAG TTTGGTATAG AATCAAACAA ATATTCCATC ATTCAAGGGG TGAAGAAACT
GTAGAAACAA AATATCCAAG TTTCTATGAC AAATCAAAAC AATTTGTGTA CAGAATGTTT ATTTGTACGT GTTTGGATTT
GGAGGTTAGC TTTATTATAT ACTTTGTAGA TAAGGTATTG TACTTGATTG TGTTGATATT TCTCATTCTT TTCCTTGAAA
GGATAGCTGG CTACGAATTT TCTTT

>Vigan.04G237300.01
ATGGGAAGCC CTCAATCCAA TTTGCCACCT GGTTTTAGGT TCCACCCAAC AGATGAAGAA CTCATTCTTC ACTACCTTAG
TAAAAGGGTT GCATCCATTC CCTTACCCGT TTCCATCATT GCTGAGGTTG ATATCTACAA GTTAGATCCA TGGGACTTGC
CAGCAAAGGC AACCTTTGGG GAGAAAGAAT GGTACTTTTT CAGTCCCAGA GACCGGAAGT ACCCAAACGG TGCAAGGCCA
AACAGGGCAG CTGCTTCAGG GTATTGGAAG GCCACTGGCA CAGATAAGAC CATAGTCACA TCATTGCAGG GTGGATCAGT
CCAAGAGAAC ATTGGTGTGA AGAAGGCTTT GGTGTTCTAC AAAGGAAGAC CCCCAAAGGG TGTCAAGACC AATTGGATCA
TGCATGAATA TCGCCTTGTA GACAACAACA AACCCATTAA GCTCAAAGAC TCCTCCATGA GATTGGACGA TTGGGTGCTG
TGTCGGATTT ACAAGAAGTC CAAACATGCT CTAACTTCAA CAGAGGCAGG AATAGGAGTT GGTGAGGTGG ATCAAGCAGA
GGAGCAGCAA TTCAATGAGA CCCTTTTGCC AATCTTAAAA TCTCCAATAC CTCCTCCTCA GAACACATTG ATGTCTCAAA
AATCTGTCTC CTTCTCCAAC CTGTTGGATG CCATGGACTA CTCTGTACTC AGCAGTTTCT TATCTGAGAA CCATTCCAAC
CCACCAGGGA TCGGATCAAG TGCAGGCTTC AACACTGAGA ATTTGGAACA GCAATCTTCT CCGATGAACA ACCCCAACAA
TAGCTACACG TTTCAGAAGA ACACCCAATT GAACCCTTCA CTCTCCAACA TGGAAAACAT GAGGCCAAAG CGCCAATTTT
CAAGCATTGA TGATGAAACT CTGTACCCAT CCAAGAAATA CCTGACTTCC TCTTGCAACT TTCCTTCCCA CATCAACCCC
CAATACGAGA ATCCACAATG GAACTACCTC GTCAAACAGT CTTTGCTGAA TCAGCGGTTA CTGCTTGGTC CTCAGCTTCA
ATTTCAAGGA TAA

>Vigan.04G237300.01
MGSPQSNLPP GFRFHPTDEE LILHYLSKRV ASIPLPVSII AEVDIYKLDP WDLPAKATFG EKEWYFFSPR DRKYPNGARP
NRAAASGYWK ATGTDKTIVT SLQGGSVQEN IGVKKALVFY KGRPPKGVKT NWIMHEYRLV DNNKPIKLKD SSMRLDDWVL
CRIYKKSKHA LTSTEAGIGV GEVDQAEEQQ FNETLLPILK SPIPPPQNTL MSQKSVSFSN LLDAMDYSVL SSFLSENHSN
PPGIGSSAGF NTENLEQQSS PMNNPNNSYT FQKNTQLNPS LSNMENMRPK RQFSSIDDET LYPSKKYLTS SCNFPSHINP
QYENPQWNYL VKQSLLNQRL LLGPQLQFQG *