GBrowse Details

Vigan.04G247200.01

Basic Information:
Name: Vigan.04G247200.01
Multiple alignment
Variant Information
Position: Chr04:36216458..36220769 (+ strand)
Length: 4312
Functional Information:
Description: Similar to DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 1. [XP_007029953.1, Theobroma cacao]
GO: Molecular Function: heat shock protein binding (GO:0031072)
Molecular Function: unfolded protein binding (GO:0051082)
InterPro: Heat shock protein DnaJ, cysteine-rich domain (IPR001305)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.47,18.20,14.51,16.44,9.64,11.94,4.07,10.78
Arabidopsis thaliana homolog: AT5G17840.1
Automatic updates:
Name: NM_001250813 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306113 (LOC100306113), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:36216458..36216640 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr04:36216641..36216826 (+ strand)
Length: 186
Type: CDS
Position: Chr04:36219483..36219744 (+ strand)
Length: 262
Type: CDS
Position: Chr04:36220370..36220437 (+ strand)
Length: 68
Type: CDS
Position: Chr04:36220438..36220769 (+ strand)
Length: 332
Type: three_prime_UTR


>Vigan.04G247200.01
AATAAATGGG CCTCACTAAG TCCGTAAGCT GAATCCGAAT TCAAGCTCGG ACGTAGAATT CGGGTATTCC ACGACCCATG
GACCCGCGTC GTGAACTTCG AGACCCAATT GATGAAACAA GCGATTTGTA CGATGAAGAG TGTTGCTTGA ACCATTTGAG
CTTTGCATGT TCATTCGGCA CCGATGGATT CAGCTTCTAT GCAAGTAGCC ACCTCAAAAA ATTTTCTTTG CCCAAATGCT
TCAGTGGCGA AGGTTGCAGG TTCCAAGAAG ATTGCCACCG TCAATTTCAG GTCCAAATTC AAAGGATGTG AAACCAAAAT
CCATGTCGTT TCCTCAAATG GTTCTGTCTC TAGCTGCTCT TCGCGTCCGT CTGTGTCAAG TTTGAAGGCA GATGATAACA
AACGCAGAAG TAATCTTGAA TCTCTGTTTT GTTATGATAA AGCTATTCCA GAAGAAATAA TTGAGAAGCC TATTGGGCTA
TCTTTGGAAG AGAAATCTAT TGGTAACAAT CCCCGATGCA CTGATTGCGA GGCCAAAGGT GCTGTGCTTT GTGTCACTTG
TGCTGGTTCT GGTCTATATG TTGATTCCAT ATTGGAAAGC CAGGGCATAA TTGTTAAAGT TCGTTGCTTA GGCTGTGGGG
GAACAGGCAA TATAATGTGT GCAGAATGTG GCGGACGAGG TCATCTGGGA CCCAAATGAT CAAGTCCTGA CCTTTTTTAA
TTTTGTTGTA CCACCAATAT ATAGTCTTTT GGCTGATATT GCATGTAACC ATTTTATTTT TATTGTTTTG TAAATCAAGG
AGTCTTGATG ACTGAAAAAA AATAAGATAT TTACAAAAAT CTCTGCTATT CCTAAAGCAT GAGCTTGTGG TCAGATCAGA
TGACTGTCAT ATTTATTCTT AATTATTCGA TTCCTCGAGG CACTTTATTT TGCTCACAGT GATGATTACT TGTAATAATA
CTTTTACATG AAAGATACAT ACAGTTGATT TATTTCTTTA AGGAAAATGT TTCATGCCCC TTTGATTTGT A

>Vigan.04G247200.01
ATGGATTCAG CTTCTATGCA AGTAGCCACC TCAAAAAATT TTCTTTGCCC AAATGCTTCA GTGGCGAAGG TTGCAGGTTC
CAAGAAGATT GCCACCGTCA ATTTCAGGTC CAAATTCAAA GGATGTGAAA CCAAAATCCA TGTCGTTTCC TCAAATGGTT
CTGTCTCTAG CTGCTCTTCG CGTCCGTCTG TGTCAAGTTT GAAGGCAGAT GATAACAAAC GCAGAAGTAA TCTTGAATCT
CTGTTTTGTT ATGATAAAGC TATTCCAGAA GAAATAATTG AGAAGCCTAT TGGGCTATCT TTGGAAGAGA AATCTATTGG
TAACAATCCC CGATGCACTG ATTGCGAGGC CAAAGGTGCT GTGCTTTGTG TCACTTGTGC TGGTTCTGGT CTATATGTTG
ATTCCATATT GGAAAGCCAG GGCATAATTG TTAAAGTTCG TTGCTTAGGC TGTGGGGGAA CAGGCAATAT AATGTGTGCA
GAATGTGGCG GACGAGGTCA TCTGGGACCC AAATGA

>Vigan.04G247200.01
MDSASMQVAT SKNFLCPNAS VAKVAGSKKI ATVNFRSKFK GCETKIHVVS SNGSVSSCSS RPSVSSLKAD DNKRRSNLES
LFCYDKAIPE EIIEKPIGLS LEEKSIGNNP RCTDCEAKGA VLCVTCAGSG LYVDSILESQ GIIVKVRCLG CGGTGNIMCA
ECGGRGHLGP K*