VIGGS:GBrowse

Vigan.04G251300.01

Basic Information:

Name:	Vigan.04G251300.01 Multiple alignment Variant Information
Position:	Chr04:36904135..36906316 (+ strand)
Length:	2182

Functional Information:

Description:	Similar to Uncharacterized protein. [M5WAL0, Prunus persica]
GO:	Molecular Function: calcium ion binding (GO:0005509)
InterPro:	EF-hand domain (IPR002048)
	EF-hand domain pair (IPR011992)
	EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:36.02,13.44,38.19,32.51,65.87,70.44,68.43,43.55
Arabidopsis thaliana homolog:	AT3G43810.1

Automatic updates:

Name:	DQ778070 NCBI(nuccore)
Organism:	Vigna radiata var. radiata
Description:	Vigna radiata var. radiata calmodulin mRNA, partial cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249180 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin (LOC100527439), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249782 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin (SCAM-3), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250954 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin (SCAM-2), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251308 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin (SCAM-1), mRNA.
PubMed ID:	24254124 NCBI(pubmed)
PubMed ID:	18347016 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001255761 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin-like (LOC100817351), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001279096 NCBI(nuccore)
Organism:	Cicer arietinum
Description:	Cicer arietinum calmodulin (CAM), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001309668 NCBI(nuccore)
Organism:	Cicer arietinum
Description:	Cicer arietinum calmodulin-7 (LOC101511497), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:36904135..36904332 (+ strand)
Length:	198
Type:	five_prime_UTR

Position:	Chr04:36904333..36904408 (+ strand)
Length:	76
Type:	CDS

Position:	Chr04:36905144..36905517 (+ strand)
Length:	374
Type:	CDS

Position:	Chr04:36905518..36906316 (+ strand)
Length:	799
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G251300.01
ATAAGTTGTT ATAGAAAAAA ACGGAAACAA GTCAATTTTA TTTACGGTAA AGAAAAAAAG ATAAAACGGG AGGTTTTGTC
GGAATAAGAT TCAAACGCTG TTTTCTGCAG TTTCTTCGTT TCTCTCTCTC TTTCTTCAGA AAAAAAGGCA GAAAAAAAAA
ACATTCAAAG AAAGAAAGAG CAATTCATTC CAATTACAAT GGCAGATCAA CTCACCGATG ATCAGATCTC CGAGTTCAAG
GAAGCCTTCA GCTTGTTCGA TAAGGATGGC GATGGTTGCA TCACAACAAA GGAGCTTGGA ACTGTCATGC GTTCTTTGGG
TCAGAATCCC ACTGAGGCAG AGCTCCAAGA CATGATCAAC GAAGTAGATG CTGATGGCAA TGGCACCATT GACTTCCCTG
AGTTCTTGAA TCTCATGGCC AGAAAGATGA AGGACACTGA CTCTGAAGAG GAGCTGAAAG AGGCGTTCCG AGTGTTCGAC
AAGGACCAGA ATGGGTTCAT TTCTGCTGCT GAGCTCCGCC ACGTGATGAC CAACCTTGGG GAGAAGCTCA CTGACGAAGA
GGTTGATGAG ATGATTCGAG AGGCTGACGT TGATGGTGAT GGCCAAATAA ATTATGAGGA GTTTGTTAAG GTCATGATGG
CCAAGTGATG GTACACCATC TCCACTAAAT TCTGAATTGA ATTGATGAAA AATCTGAATT ATGACTGTGC TATATAGAAC
ATCTAGTCCT TGTCTACCTG TCATTTCTGT CTTCTTTCTA AATTTTTATA TGATGCTTTT TGAATTCAAT CTTAACGACG
TTTAGTGGAA ATCACTGCTG CTAATGGTAA TTGTGTTGCA ATGGTGTCTT TTGATGTTTA TTTAACTCTG GTTTCTAGTC
ATTGTCTAAG ACAAGGTAAG TAAAATAAGT TTGAGATTAC TGCAATCTAG ACTAAAACAT GGTTGATATC CTCGCACAAA
TATTTGTTTC ATTGCATTGG AACATACAAC CTTTTGAACT CTAGGTTTTT GTTAATTCCA GGTTGTAATT CTGATTTTAC
CATGTTTCCT TGGTTTTTCT GACTCAACTC GCTGAAGCAG GAGTAATATG ATAAGACCTA TTCCTTATTT TCATTGATGA
CTCTCCTATG AGCTTGTTAT AGTTGCATTG TTTTAGTAGG CTCCAATCCA TACTCCATCA ACTCTTATCT GTGCTTGCTT
TCCACCCTTT TAGCATTCAT AGCAAAAGTA GTTTCCCCAT TTTTGGTTTG TCTTATGCAG TTGAGTACAA CATTGTAGGT
TTTGATGTTC TATGTCAGTC CTTCCTGGCA CAGGGAAGAC TCATGAAATG ATAATATATA CCAACAAACA AAGATCCCCT
TTCCAATGTA ACTTCCAGTT AGACCCTATT AATATATACA TTATCTTTTC TACCATCATC TGAATGCACA TCTCCGATGA
ACTCCAT

[show][hide][copy]CDS

>Vigan.04G251300.01
ATGGCAGATC AACTCACCGA TGATCAGATC TCCGAGTTCA AGGAAGCCTT CAGCTTGTTC GATAAGGATG GCGATGGTTG
CATCACAACA AAGGAGCTTG GAACTGTCAT GCGTTCTTTG GGTCAGAATC CCACTGAGGC AGAGCTCCAA GACATGATCA
ACGAAGTAGA TGCTGATGGC AATGGCACCA TTGACTTCCC TGAGTTCTTG AATCTCATGG CCAGAAAGAT GAAGGACACT
GACTCTGAAG AGGAGCTGAA AGAGGCGTTC CGAGTGTTCG ACAAGGACCA GAATGGGTTC ATTTCTGCTG CTGAGCTCCG
CCACGTGATG ACCAACCTTG GGGAGAAGCT CACTGACGAA GAGGTTGATG AGATGATTCG AGAGGCTGAC GTTGATGGTG
ATGGCCAAAT AAATTATGAG GAGTTTGTTA AGGTCATGAT GGCCAAGTGA

[show][hide][copy]PROTEIN

>Vigan.04G251300.01
MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT
DSEEELKEAF RVFDKDQNGF ISAAELRHVM TNLGEKLTDE EVDEMIREAD VDGDGQINYE EFVKVMMAK*