GBrowse Details

Vigan.04G254100.01

Basic Information:
Name: Vigan.04G254100.01
Multiple alignment
Variant Information
Position: Chr04:37118333..37124325 (+ strand)
Length: 5993
Functional Information:
Description: Similar to uncharacterized protein. [B8BIV2, Oryza sativa subsp. indica]
InterPro: Protein of unknown function DUF309 (IPR005500)
TTHA0068-like domain (IPR023203)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.49,3.65,102.43,0.05,2.46,0.18,5.87
Arabidopsis thaliana homolog: AT2G41120.1
Automatic updates:
Name: NM_001255783 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100785613 (LOC100785613), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:37118333..37118514 (+ strand)
Length: 182
Type: five_prime_UTR
Position: Chr04:37118515..37118907 (+ strand)
Length: 393
Type: CDS
Position: Chr04:37123331..37123478 (+ strand)
Length: 148
Type: CDS
Position: Chr04:37123803..37124029 (+ strand)
Length: 227
Type: CDS
Position: Chr04:37124030..37124325 (+ strand)
Length: 296
Type: three_prime_UTR


>Vigan.04G254100.01
AACCGTCCAA AACAAAAAAT CTAGGCAACA ATAAAGTACA GTACCACAAA ATCATATTCA TAAATCTTAA AAGAGTGGAA
GAATTCTTAG TTGCCACGAC ATGAGCTTCC ACCATCACCA CAGAAAAAAA TGAAAGAAAA TATGGCTAAA CAAGAGAAAC
CTTTCTTTGC CATTCATCAT CCATGGCTCT TCTTCCTTCT TCTTCTCTCA TAACTCTTCT CCATATCTCA TCCCAACGTT
ATCTTCCATC TTCCTTTCAC AGCTCCATCA CTCTTGCATC ATCTTTCAAA CCACTGACTA TTTCAAAGCA GCACCTGAGC
CACAGAAGCT GCAATTCCAA GCTCTTGGCT TTTTCTTACA GGTATTTCAT TGAAGAAGAA GAAGAAGATA ATGAAGATGA
AGATGATGAT GAAAACCACA CCTTTGATGA AGCTGTGGCT CTCTTCAATG GAGGAGAGTA CTACAAATGT CATGACTATC
TTGAATCCCT TTGGAACAAT GCAGAAGAGC CCACCAGCAC ACTCATTCAT GGAATACTCC AATGTGCGGT CGGTTTCTAC
CACCTCTTCA ACCAGAACCA CAGGGGAGCA ATGATGGAGT TGGGGGAAGG ACTATGTAAA TTGAGAAAGA TGGAATTCTC
AAATGGACCA TTCCATAAGT TTGAGAAAGA TATTTCAGCA GTTCTAGATT TTATCTATCA GACTCAAATA GAGTTAGCTG
CATGTAGTGA GGATGTATGT GTTACAATGG ATCGATCAGA AAGATCTTAC CGACTTCTGG GGGAATATGC TTCAGGGAAG
CGTGTGTATG ATCTAGAACT TTGTAGCGAT GCATCAGTGT ACATTGTGTT CTGTCCTCAA GGCTCTAATG GTTCCTCTGA
AGCCCCAAGG GTAAAGCTTC CTAAGCTTAA GGCTACCATG GAACATCTTG TAGCCTATGA ATACAAGTGA ACATCTTTTC
AAGACACTGT CCATAGATCA AACCACATGC AATATTTTTC TGTCCTTCTG TTGGAAGGAA GAATTCTCTC GTGCAGTTAT
CATAGAATAG TATCCTGGAG TGAAAATAGC AGTCACAATA TGCAAAAAAC CTGTGCAATG ATTTCAAAAT TTGTGCATTT
ATGTAACCCC TCTTCCTATA CCAGGTCTTT GATTTTGCAA ACACCTAAAA ATATCATATT TAAACTGCAA TACACTACTG
AGTGTTTTCA AAATTTTATC TTAAATAATT CAGAAGTACT TATGCA

>Vigan.04G254100.01
ATGGCTCTTC TTCCTTCTTC TTCTCTCATA ACTCTTCTCC ATATCTCATC CCAACGTTAT CTTCCATCTT CCTTTCACAG
CTCCATCACT CTTGCATCAT CTTTCAAACC ACTGACTATT TCAAAGCAGC ACCTGAGCCA CAGAAGCTGC AATTCCAAGC
TCTTGGCTTT TTCTTACAGG TATTTCATTG AAGAAGAAGA AGAAGATAAT GAAGATGAAG ATGATGATGA AAACCACACC
TTTGATGAAG CTGTGGCTCT CTTCAATGGA GGAGAGTACT ACAAATGTCA TGACTATCTT GAATCCCTTT GGAACAATGC
AGAAGAGCCC ACCAGCACAC TCATTCATGG AATACTCCAA TGTGCGGTCG GTTTCTACCA CCTCTTCAAC CAGAACCACA
GGGGAGCAAT GATGGAGTTG GGGGAAGGAC TATGTAAATT GAGAAAGATG GAATTCTCAA ATGGACCATT CCATAAGTTT
GAGAAAGATA TTTCAGCAGT TCTAGATTTT ATCTATCAGA CTCAAATAGA GTTAGCTGCA TGTAGTGAGG ATGTATGTGT
TACAATGGAT CGATCAGAAA GATCTTACCG ACTTCTGGGG GAATATGCTT CAGGGAAGCG TGTGTATGAT CTAGAACTTT
GTAGCGATGC ATCAGTGTAC ATTGTGTTCT GTCCTCAAGG CTCTAATGGT TCCTCTGAAG CCCCAAGGGT AAAGCTTCCT
AAGCTTAAGG CTACCATGGA ACATCTTGTA GCCTATGAAT ACAAGTGA

>Vigan.04G254100.01
MALLPSSSLI TLLHISSQRY LPSSFHSSIT LASSFKPLTI SKQHLSHRSC NSKLLAFSYR YFIEEEEEDN EDEDDDENHT
FDEAVALFNG GEYYKCHDYL ESLWNNAEEP TSTLIHGILQ CAVGFYHLFN QNHRGAMMEL GEGLCKLRKM EFSNGPFHKF
EKDISAVLDF IYQTQIELAA CSEDVCVTMD RSERSYRLLG EYASGKRVYD LELCSDASVY IVFCPQGSNG SSEAPRVKLP
KLKATMEHLV AYEYK*