GBrowse Details

Vigan.04G260500.01

Basic Information:
Name: Vigan.04G260500.01
Multiple alignment
Variant Information
Position: Chr04:37956839..37958936 (- strand)
Length: 2098
Functional Information:
Description: Similar to Uncharacterized protein. [B7FIE8, Medicago truncatula]
GO: Biological Process: protein folding (GO:0006457)
Cellular Component: cytoplasm (GO:0005737)
InterPro: GroES (chaperonin 10)-like (IPR011032)
Chaperonin Cpn10 (IPR020818)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.13,32.38,32.66,19.43,63.91,75.21,43.49,21.29
Automatic updates:
Name: NM_001251068 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306384 (LOC100306384), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254400 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 10 kDa chaperonin-like (LOC100800967), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:37956839..37957191 (- strand)
Length: 353
Type: three_prime_UTR
Position: Chr04:37957192..37957240 (- strand)
Length: 49
Type: CDS
Position: Chr04:37958099..37958238 (- strand)
Length: 140
Type: CDS
Position: Chr04:37958724..37958828 (- strand)
Length: 105
Type: CDS
Position: Chr04:37958829..37958936 (- strand)
Length: 108
Type: five_prime_UTR


>Vigan.04G260500.01
AATTTAAACC CTTTGTAAAA CCCTAACAAG TGACCTCAAA TTTTTCCTCA AGGTACTCTC CGTGTTCCGT TCTTTCACTT
CTCTTTGGTA TTGTGTGGTG TATTCCAAAT GGCAAAGCGT TTGATTCCAC TGTTCAATCG TGTTTTGGTG GAGAAAATCG
TGCCTCCATC AAAGACCAAT GCTGGCATTT TGTTACCAGA GAAATCCTCC AAGCTGAATT CCGGGAAAGT TATTGCTGTT
GGCCCTGGCA TTCATAGTAA GGATGGGAAG CTAATTCCAG TGGCTGTAAA TGAAGGTGAC ACTGTTCTTT TGCCTGAGTA
TGGGGGAACT GAGGTGAAGC TTGACAACAA AGAGTATCAT CTTTATAGAG ACGACGATAT TCTCGGGACA CTGCACGATT
GATGTTAAAC TCATTAGCAG ACTGATGTTA AACTTGTTGG CTGATGTTGC TGTAGTAAAA TTTATATACC TGGTGTTTTA
TTACGTTTGG ATTAAACAAT TTCTTTCTGT CTAAGTTTTA TTAGAAATTG TGGAGCCAAG CACATTTAAT TTTCTTGGCC
GACATCGAAT CAATAGCGTT ATTTTCTGCT ATAACAGGAA AACTACTTTG TTGCTCATAA AATGTATTGT CTTACATTTT
TCAGCGTTCT GTTTTGTGGC TTGGTTAAAA GAATTTATTG TTGTCACGTT TTCTGCTGCA TACTCGTGGA TAAACGGGTA
ACATGTATTT TGTGAAAGTA ACAATTTTTT TTAAA

>Vigan.04G260500.01
ATGGCAAAGC GTTTGATTCC ACTGTTCAAT CGTGTTTTGG TGGAGAAAAT CGTGCCTCCA TCAAAGACCA ATGCTGGCAT
TTTGTTACCA GAGAAATCCT CCAAGCTGAA TTCCGGGAAA GTTATTGCTG TTGGCCCTGG CATTCATAGT AAGGATGGGA
AGCTAATTCC AGTGGCTGTA AATGAAGGTG ACACTGTTCT TTTGCCTGAG TATGGGGGAA CTGAGGTGAA GCTTGACAAC
AAAGAGTATC ATCTTTATAG AGACGACGAT ATTCTCGGGA CACTGCACGA TTGA

>Vigan.04G260500.01
MAKRLIPLFN RVLVEKIVPP SKTNAGILLP EKSSKLNSGK VIAVGPGIHS KDGKLIPVAV NEGDTVLLPE YGGTEVKLDN
KEYHLYRDDD ILGTLHD*