GBrowse Details

Vigan.04G263900.01

Basic Information:
Name: Vigan.04G263900.01
Multiple alignment
Variant Information
Position: Chr04:38452467..38457045 (+ strand)
Length: 4579
Functional Information:
Description: Similar to Uncharacterized protein. [I1JN61, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: BTB/POZ-like (IPR000210)
Ankyrin repeat (IPR002110)
BTB/POZ fold (IPR011333)
BTB/POZ (IPR013069)
Ankyrin repeat-containing domain (IPR020683)
Domain of unknown function DUF3420 (IPR024228)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.89,0.77,2.62,1.30,23.08,1.43,0.72,3.95
Arabidopsis thaliana homolog: AT2G41370.1, AT3G57130.1
Automatic updates:
Name: NM_001289353 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max regulatory protein NPR5-like (LOC100816086), mRNA.
PubMed ID: 23136374 NCBI(pubmed)
Status: Known Variant
Name: NM_001424638 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula BTB/POZ domain and ankyrin repeat-containing protein NOOT1-like (LOC11417633), mRNA.
PubMed ID: 31856724 NCBI(pubmed)
23136374 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:38452467..38453213 (+ strand)
Length: 747
Type: five_prime_UTR
Position: Chr04:38453214..38453660 (+ strand)
Length: 447
Type: CDS
Position: Chr04:38454733..38455713 (+ strand)
Length: 981
Type: CDS
Position: Chr04:38455714..38457045 (+ strand)
Length: 1332
Type: three_prime_UTR


>Vigan.04G263900.01
AAAAGAATTA AAAAAAAAAG AAAGAGAGAG TGTGTGTATA TATATCCAAA AACGTGGACA GGAGGTACAA GTGCAACAGT
CAACAGAATA GGGCCCAAGG AGTTGTATTA TAGTATGTAT TAGTCTATTT AGAGAGACTT AAGTTGGTTA TAATATTAAT
CACATATAAT AAGCAAAGTC TAAACTGTGT TTATTTAATC CAAACATCAT TTTCAATGCT TCTACTTCCA CCCCTCTCAC
ACCACTACAT GCTTCTACTC TACACTACTT CTCTCTCTCA GTATACAAAA AGGATGAACA GGAAAAAATA CATTTTTAAT
TAATATTTGA GGCCTTTTTT AACCCCTCAG CCGCCCAGAA TAGCCACCCA AATTCCAATC TCTGTTTCTC TTTCTCTCTC
TCTCTCTCTC TTCAAAATAT CTATCTATCC ATCAAAATAC ACCATGCCCC TCCATTCACC ATTCACCCAG CGAATCCCAT
AAGACACAAC CACAGTACCA TCATCATCAT CATCACCATC ATCAACATCA AACAAAAACA AAAACAAAAA CAAACGGATC
AACCCAACTT CAACTTCAAC CCCTTTCTTC CTTCCCTCAC TATTCCATCT CTCTCACTTT TCCCTTCTCT CTCTCTTCTC
TCTCTCTTTC ATTCTTTTGC TGGCAATAAC TTACAGCCAC CAACCCTAGA GCGTTGAAGA GACAACACAG TACTTTATTC
ACAACAACAG TAACAGTCTT CACCACCATG TCCCTTGAAG ACTCTCTAAG ATCTCTCTCC CTCGATTACC TCAACCTCCT
CATCAACGGC CAGGCCTTCA GCGACGTCAC TTTCAGCGTC GAGGGTCGCC TCGTCCACGC CCACCGCTGC ATACTCGCCG
CCCGTAGCCT CTTCTTCCGC AAATTCTTCT GCGGCCCGGA CCCTCCCTCC GCCCTCGACC CCGCCGGCCC GCGACTCAAC
TCGCGCTCCG GCGTCATCCC AGTCAACTCC GTCGGCTACG AGGTCTTCCT TCTCATGCTC CAGTTCCTCT ACAGTGGCCA
AGTCTCCATC GTCCCTCCCA AGCACGAGGC CCGCCCCAAT TGCGGCGAAC GAGGCTGCTG GCACACGCAT TGCACTTCCG
CAGTCGATCT CGCCCTTGAC ACCCTCGCCG CCTCCAGATA CTTCGGCGTC GAACAGCTTG CATTGCTTAC CCAGAAACAA
CTTGCGAGCA TGGTGGAGAA GGCTTCCATA GAGGATGTAA TGAAAGTGCT GTTGGCTTCC AGAAAGCAAG ACATGCAGCA
ACTATGGGCC ACTTGTTCTC ACTTAGTAGC GAAATCAGGT CTTCCTCCGG AGGTTCTCGC CAAGCACCTT CCCATAGACA
TTGTGGCCAA GATCGAAGAG CTACGTATCA AATCCTCCAT GGCGCGCCGC TCCTTGGTGC CACACCACCA CCATCACCCC
CACCACCACC ACGCCGCCCT CGATCTCGAG GACCAGAAAA TCCGCCGAAT GAGGCGTGCC CTGGACTCCT CCGACGTCGA
ACTCGTAAAG CTCATGGTAA TGGGGGAGGG TCTCAACCTC GACGAAGCAC TGGCCTTACC CTATGCTGTT GAGAACTGCA
GCAGAGAGGT GGTGAAGGCA TTGCTGGAAC TGGGTGCAGC AGATGTCAAC TACCCCTCCG GTCCCGCCGG GAAAACACCG
CTCCACATTG CGGCGGAGAT GGTGTCACCT GACATGGTGG CCGTGCTGCT GGACCACCAC GCGGACCCAA ACGTGAGAAC
AGTTGATGGG GTCACGCCTT TGGACATCCT CAGAACCCTA ACCTCGGATT TCCTCTTTAA GGGTGCCGTC CCAGGATTGA
CCCACATAGA ACCCAATAAA CTGAGACTGT GTTTGGAGCT TGTTCAATCG GCAGCTCTTG TCATGTCAAG AGAAGAAGGC
AATGCCAACA ACAACAACGG GCCTTCCAAT TCCGCAGCAC CCATTTACCC TCCCCCCATG AACGAGGACC ATAACAGCAG
TAGTAGCAGC GGCAATAACA ACAACAACAT TGGAAATCTG AACCTGGATT CAAGGTTGGT GTACCTGAAC CTTGGTGCGA
CAGCTTCGAT GAGTTCACGG TTGGACGGTG GTGAGGAGGA GAGGGAAGCC ATGAACACAA ACATGTACCA CCATCACCAC
TCTCATGACT TCTAGTATCT TGAGGGTGAG AGTTTGGAAG CACTGATAGA TGATTGGAAG CTGTTTGAAT TGACACGGAC
GATGGAGAAT GGAGAATTTA AAGAGGATGA TGAGAGGGGG AGAATTGTTG ATGAATATGG AGGGACCCTA TTGAAGGGAT
GGAGCACGAA AGAGTCTTCT TCTTTTGTGA GTTGAAATAG ACTGGTATTC ACTGCCCTTC TGATTTATCT GTGTTGGCTC
TCTGCTATTT TGTTGGGTTT TTTTTTTTTT TTTTTCTTTT TCTTTTTAGC TTTTGGAGTT TAGGCCTTTC AAATGGTCAC
CATTTGAAGT GCGGTTTCAT GGGAGATTGG GATAAGAGAC AGGGAGAATC TAATGGGGGT TCAATTTATT TTTTGTTTTT
ATTTTTCTGT GAAACGAAAG GGTGCATGGA GGAGACGCAG GTCAATCTTT TCAAATCCTC CTTCACCTGT CAACTCCTTA
ATTTGTATTT ACTGATCCGT AGCTAATATC ACGGCCTATT TATTGTGATC GCTTTACAAT TTCAGATTAT CTTGTCCCAC
CCGCACTTTC TCATAACCCA CCCCTCAATT ATTTCTTCAC ATTATCTTTT GCTTCTTCTT CCTGTGCTGT TCGGCCTTTC
TTTATTTCTT TTTCATTTTT TCTTTTCTCA ATTCCCATTC TTATTTTTTC TACTCAGTTT AAGTGATCAT ATACTATATA
GGGCTGTCTC TTCCCTTCTG TTCCCACCTA ATATATTATG TTCTTTTCCT TCTACCATTT TCTTCCCCTT TGGAACCATC
CTTTGGCTAG TGTTTTGGGC TTAATTATTC TAATCAAAAT CATGTGGCTC TGGACAAATT GATCTCTTGT CTTGCATGAA
TGCAACAATG AGTGTGACCA CACATGTCAA GTTAAAAAAT TGGCACTATC ACCTTCCATG TAATCCTCTT CTTGTCCCCC
CTTACCTTTT TTAGCTCTCT TTAGACAAAA CAAAAATATA TAACTTACAC CTAAAACCCT ATTATATTAC TAATCATTTC
TTTAATTATT TCTATATCTT CTGTCTAAAT TCATCGGATA TGGAAGATTC TTGCAGATTA GTAGTATTCT ATATCATTTT
CTGCTTCAAC GTATGCTGTT TATCCAGGGT CTTTACTACT GCATGCATTC TCCCAAATCA ACCTTATTCA TGTTCTACCA
CCATCTCTCG TATCAATACA TTTAAAACTA TATATAATTA TCTACAAGAT TATGTATTGT GTATGTATAT GTAAGATGCA
TTCACATCAG GTCCAAACCT TCTGTCTACA CATTTTTTTC CTAATGATTA ATTTATCACC CTAACGG

>Vigan.04G263900.01
ATGTCCCTTG AAGACTCTCT AAGATCTCTC TCCCTCGATT ACCTCAACCT CCTCATCAAC GGCCAGGCCT TCAGCGACGT
CACTTTCAGC GTCGAGGGTC GCCTCGTCCA CGCCCACCGC TGCATACTCG CCGCCCGTAG CCTCTTCTTC CGCAAATTCT
TCTGCGGCCC GGACCCTCCC TCCGCCCTCG ACCCCGCCGG CCCGCGACTC AACTCGCGCT CCGGCGTCAT CCCAGTCAAC
TCCGTCGGCT ACGAGGTCTT CCTTCTCATG CTCCAGTTCC TCTACAGTGG CCAAGTCTCC ATCGTCCCTC CCAAGCACGA
GGCCCGCCCC AATTGCGGCG AACGAGGCTG CTGGCACACG CATTGCACTT CCGCAGTCGA TCTCGCCCTT GACACCCTCG
CCGCCTCCAG ATACTTCGGC GTCGAACAGC TTGCATTGCT TACCCAGAAA CAACTTGCGA GCATGGTGGA GAAGGCTTCC
ATAGAGGATG TAATGAAAGT GCTGTTGGCT TCCAGAAAGC AAGACATGCA GCAACTATGG GCCACTTGTT CTCACTTAGT
AGCGAAATCA GGTCTTCCTC CGGAGGTTCT CGCCAAGCAC CTTCCCATAG ACATTGTGGC CAAGATCGAA GAGCTACGTA
TCAAATCCTC CATGGCGCGC CGCTCCTTGG TGCCACACCA CCACCATCAC CCCCACCACC ACCACGCCGC CCTCGATCTC
GAGGACCAGA AAATCCGCCG AATGAGGCGT GCCCTGGACT CCTCCGACGT CGAACTCGTA AAGCTCATGG TAATGGGGGA
GGGTCTCAAC CTCGACGAAG CACTGGCCTT ACCCTATGCT GTTGAGAACT GCAGCAGAGA GGTGGTGAAG GCATTGCTGG
AACTGGGTGC AGCAGATGTC AACTACCCCT CCGGTCCCGC CGGGAAAACA CCGCTCCACA TTGCGGCGGA GATGGTGTCA
CCTGACATGG TGGCCGTGCT GCTGGACCAC CACGCGGACC CAAACGTGAG AACAGTTGAT GGGGTCACGC CTTTGGACAT
CCTCAGAACC CTAACCTCGG ATTTCCTCTT TAAGGGTGCC GTCCCAGGAT TGACCCACAT AGAACCCAAT AAACTGAGAC
TGTGTTTGGA GCTTGTTCAA TCGGCAGCTC TTGTCATGTC AAGAGAAGAA GGCAATGCCA ACAACAACAA CGGGCCTTCC
AATTCCGCAG CACCCATTTA CCCTCCCCCC ATGAACGAGG ACCATAACAG CAGTAGTAGC AGCGGCAATA ACAACAACAA
CATTGGAAAT CTGAACCTGG ATTCAAGGTT GGTGTACCTG AACCTTGGTG CGACAGCTTC GATGAGTTCA CGGTTGGACG
GTGGTGAGGA GGAGAGGGAA GCCATGAACA CAAACATGTA CCACCATCAC CACTCTCATG ACTTCTAG

>Vigan.04G263900.01
MSLEDSLRSL SLDYLNLLIN GQAFSDVTFS VEGRLVHAHR CILAARSLFF RKFFCGPDPP SALDPAGPRL NSRSGVIPVN
SVGYEVFLLM LQFLYSGQVS IVPPKHEARP NCGERGCWHT HCTSAVDLAL DTLAASRYFG VEQLALLTQK QLASMVEKAS
IEDVMKVLLA SRKQDMQQLW ATCSHLVAKS GLPPEVLAKH LPIDIVAKIE ELRIKSSMAR RSLVPHHHHH PHHHHAALDL
EDQKIRRMRR ALDSSDVELV KLMVMGEGLN LDEALALPYA VENCSREVVK ALLELGAADV NYPSGPAGKT PLHIAAEMVS
PDMVAVLLDH HADPNVRTVD GVTPLDILRT LTSDFLFKGA VPGLTHIEPN KLRLCLELVQ SAALVMSREE GNANNNNGPS
NSAAPIYPPP MNEDHNSSSS SGNNNNNIGN LNLDSRLVYL NLGATASMSS RLDGGEEERE AMNTNMYHHH HSHDF*