GBrowse Details

Vigan.04G264400.01

Basic Information:
Name: Vigan.04G264400.01
Multiple alignment
Variant Information
Position: Chr04:38483580..38487494 (- strand)
Length: 3915
Functional Information:
Description: Similar to Pyrroline-5-carboxylate reductase. [Q9AYM3, Vigna unguiculata]
GO: Biological Process: proline biosynthetic process (GO:0006561)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: pyrroline-5-carboxylate reductase activity (GO:0004735)
InterPro: Pyrroline-5-carboxylate reductase (IPR000304)
6-phosphogluconate dehydrogenase, C-terminal-like (IPR008927)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.10,8.77,17.54,4.71,36.76,21.43,12.39,9.03
Arabidopsis thaliana homolog: AT5G14800.1
Automatic updates:
Name: NM_001248985 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pyrroline-5-carboxylate reductase (AA 1- 274) (LOC547907), mRNA.
PubMed ID: 2199815 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:38483580..38483826 (- strand)
Length: 247
Type: three_prime_UTR
Position: Chr04:38483827..38484009 (- strand)
Length: 183
Type: CDS
Position: Chr04:38484715..38484820 (- strand)
Length: 106
Type: CDS
Position: Chr04:38485200..38485320 (- strand)
Length: 121
Type: CDS
Position: Chr04:38486199..38486271 (- strand)
Length: 73
Type: CDS
Position: Chr04:38486759..38486850 (- strand)
Length: 92
Type: CDS
Position: Chr04:38486927..38486975 (- strand)
Length: 49
Type: CDS
Position: Chr04:38487057..38487257 (- strand)
Length: 201
Type: CDS
Position: Chr04:38487258..38487494 (- strand)
Length: 237
Type: five_prime_UTR


>Vigan.04G264400.01
AAACACTCAA AGAATCTATT TAGATAAATA AAGTGTTAGT GGGTCCTGAT GTAAAATGGG GGCTACAGCA GAAAAAATTT
CCAAATTGAA TATGCAAGTG TAACAACAAA CCAAAAAACT GGAAGTGGAA GAGTGGCCAA ACCAAACCAA TCAACGTGAC
TGCGTCACTT CTCTTCTTTC TCTGTTTCCC TATTTCAGTT TCAGATCCAA ACTGATTTCT CTGCCAAGTA ACCCAAAATG
GAAATCGCTA GCATTCCCGC CGACACCTAC ACTCTCGGTT TCATCGGCGC CGGAAAAATG GCCGAGTCCA TTGCCCGCGG
TGCCGTTCGC TCCGGTGTTC TGCCGCCTTC TCGCATTCGC ACCGCTGTAC ACTCCAATCC CGCGCGCCGC ACAGCGTTCG
AATCATTCGG GGTCACCGTC CTCTCATCGA ACGACGACGT CGTGCGCGAA AGCAACGTCG TCGTTCTATC GGTCAAACCT
CAATTAGCGA AAGACGTGGT GTCGAAATTG AAGTCGATAA TCACGAAGGA TAAGCTTTTG GTTTCGGTGG CTGCTGGCGT
CAAGTTGAAA GATCTTCAGG AATGGGCAGG GAGTGACAGA TTTATAAGGG TGATGCCTAA TACACCTGCT GCAGTTGGCG
AGGCAGCATC AGTTATGAGC TTGGGGGCAG CTGCAACAGA GGAAGATGGA AATATTATAG CTAAATTGTT TGGGTCGATC
GGCAAAATAT GGAGAGCTGA AGAAAAATAT TTTGATGGAA TAACTGGCCT GAGTGGTAGT GGTCCTGCGT ACATTTATTT
AGCAATAGAA GCTTTGGCTG ATGGAGGAGT AGCAGCTGGT CTACCACGTG ATCTTTCATT AAGTCTAGCT TCTCAAACTG
TATTGGGGGC AGCATCAATG GTGACACAGA CTGGGAAGCA CCCGGGCCAA CTCAAGGATG ACGTTACTTC TCCCGGTGGG
ACAACAATTA CGGGCATTCA TGAATTAGAA AATGGTGGGT TCCGTGGAAC ACTGATGAAT GCTGTTGTTG CTGCTGCTAA
GCGCAGCCGC GAGCTTTCTT GAGTGTAGAG ATTAGTATTT ACCTTTTTAA GATAAAATCA GATTTTGGCA GAATTTTCAG
TTTATTTGAA CTTTGGTGTA GGAGTTATTT AGTTCGGGCT AGCATCATGT ATGTGTATGT CTGTTTGATG TTAAAAGTAT
AAATAAAACA CTTGGCCTCG AAGATAAGAG TTGCATTCTT CTGGATGCAT TTTGTCTCTA ATCTTTCTGA ATTTCTTCTA
TTTACATGCT GAAAATGAAA CTAAACGTT

>Vigan.04G264400.01
ATGGAAATCG CTAGCATTCC CGCCGACACC TACACTCTCG GTTTCATCGG CGCCGGAAAA ATGGCCGAGT CCATTGCCCG
CGGTGCCGTT CGCTCCGGTG TTCTGCCGCC TTCTCGCATT CGCACCGCTG TACACTCCAA TCCCGCGCGC CGCACAGCGT
TCGAATCATT CGGGGTCACC GTCCTCTCAT CGAACGACGA CGTCGTGCGC GAAAGCAACG TCGTCGTTCT ATCGGTCAAA
CCTCAATTAG CGAAAGACGT GGTGTCGAAA TTGAAGTCGA TAATCACGAA GGATAAGCTT TTGGTTTCGG TGGCTGCTGG
CGTCAAGTTG AAAGATCTTC AGGAATGGGC AGGGAGTGAC AGATTTATAA GGGTGATGCC TAATACACCT GCTGCAGTTG
GCGAGGCAGC ATCAGTTATG AGCTTGGGGG CAGCTGCAAC AGAGGAAGAT GGAAATATTA TAGCTAAATT GTTTGGGTCG
ATCGGCAAAA TATGGAGAGC TGAAGAAAAA TATTTTGATG GAATAACTGG CCTGAGTGGT AGTGGTCCTG CGTACATTTA
TTTAGCAATA GAAGCTTTGG CTGATGGAGG AGTAGCAGCT GGTCTACCAC GTGATCTTTC ATTAAGTCTA GCTTCTCAAA
CTGTATTGGG GGCAGCATCA ATGGTGACAC AGACTGGGAA GCACCCGGGC CAACTCAAGG ATGACGTTAC TTCTCCCGGT
GGGACAACAA TTACGGGCAT TCATGAATTA GAAAATGGTG GGTTCCGTGG AACACTGATG AATGCTGTTG TTGCTGCTGC
TAAGCGCAGC CGCGAGCTTT CTTGA

>Vigan.04G264400.01
MEIASIPADT YTLGFIGAGK MAESIARGAV RSGVLPPSRI RTAVHSNPAR RTAFESFGVT VLSSNDDVVR ESNVVVLSVK
PQLAKDVVSK LKSIITKDKL LVSVAAGVKL KDLQEWAGSD RFIRVMPNTP AAVGEAASVM SLGAAATEED GNIIAKLFGS
IGKIWRAEEK YFDGITGLSG SGPAYIYLAI EALADGGVAA GLPRDLSLSL ASQTVLGAAS MVTQTGKHPG QLKDDVTSPG
GTTITGIHEL ENGGFRGTLM NAVVAAAKRS RELS*