GBrowse Details

Vigan.04G264800.01

Basic Information:
Name: Vigan.04G264800.01
Multiple alignment
Variant Information
Position: Chr04:38518511..38522781 (- strand)
Length: 4271
Functional Information:
Description: Similar to DNA-directed RNA polymerase V subunit 5A-like, partial. [XP_006605207.1, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro: RNA polymerase, subunit H/Rpb5 C-terminal (IPR000783)
RNA polymerase, Rpb5, N-terminal (IPR005571)
DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus (IPR014381)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.61,12.97,7.61,9.60,31.12,29.90,12.75,9.88
Arabidopsis thaliana homolog: AT3G57080.1
Automatic updates:
Name: NM_001249598 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerase II subunit family protein (LOC100306033), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:38518511..38518735 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr04:38518736..38518861 (- strand)
Length: 126
Type: CDS
Position: Chr04:38519836..38519949 (- strand)
Length: 114
Type: CDS
Position: Chr04:38521655..38521831 (- strand)
Length: 177
Type: CDS
Position: Chr04:38522380..38522667 (- strand)
Length: 288
Type: CDS
Position: Chr04:38522668..38522781 (- strand)
Length: 114
Type: five_prime_UTR


>Vigan.04G264800.01
AAAAAATTGA AATATGAAAA TGAATATGTC TGTTTTAATT TAATGCTCGC AATCAGCAGT GAATTAAAAA GAAAAATTTG
AACCGAAGTG ACTTTGATTC ACAGTAAGAG AGAGATGGCA GCTGAGTACG GGTTCGAATT GGCGAGAGTG GGAGGAGAAG
GAGAAGAACA AGAAGAAGTG AAAGGGTGTT TGAGCAAGTT CATCGATGAT GGCAGCGTTG AAAGTCACAG ATACTACTTG
TCTCGCAGAA CCACTTTGGA AATGCTCAGA GACAGAGGCT ACTCCATTCC CTCCAGCGAA ATCGACCTTT CTCTCTCTCA
ATTCCGCCAC ATGCATGGTC ATTCCCCTGA CCCTGACCGT CTCCGCCTCT CCCTCACTCA CGCCACCAAC CCTTCCAAAA
GGATTTTAGT CATTTTCTGC GGGCCAGGTT CTGTGAAAGT TACTGCCATT CGGAACATTG CGGGGCAGAT TGTTAATAGA
GACACTTTGG GTGGTCTTAT ATTGATAGTG GAGAATCATG TTACTAGCCA GGCCTTGAAA GCCGTTGATC TTTTTCCCTT
CAAGGTTGAA ATTTTCCAGA TCACAGATTT GCTTGTTAAT ATTACAAAGC ATGTGTTGAA GCCAAAGCAT CAGGTGCTGA
CTGATAGGCA GAAGAAAAAT CTCCTGAAGA AGTTCAATAT AGAAGAAAAG CAGCTTCCCC GCATGCTAAA GAGTGATGCA
ATTGCACGAT ATTATGGACT TGAGAGGGGC CAAGTAGTTA AAGTTACCTA TAGTGGTGAA ATCACCCAGA TGCATGTCAC
ATATCGATGT GTGTGGTGAT AGTTTCTTGT GCTCTTTTGT ATTTTTGCAG GTTGAATTCG TAGTATTTAA CTGTTGTATC
ATGCTTAAGG TTATGATTGC ATAAGTTGAT CAATCCTAAC GCTCTGAATC TGTACTCTGT AAATTTGGTG ATGACATTTC
TCTCTCTTAA CTTCTTGAAG AACAACCTGC ATTGAGCAAC TTCATTCACA AACGTTTATT TTATTTATTT ACATTTTTGT
GAAA

>Vigan.04G264800.01
ATGGCAGCTG AGTACGGGTT CGAATTGGCG AGAGTGGGAG GAGAAGGAGA AGAACAAGAA GAAGTGAAAG GGTGTTTGAG
CAAGTTCATC GATGATGGCA GCGTTGAAAG TCACAGATAC TACTTGTCTC GCAGAACCAC TTTGGAAATG CTCAGAGACA
GAGGCTACTC CATTCCCTCC AGCGAAATCG ACCTTTCTCT CTCTCAATTC CGCCACATGC ATGGTCATTC CCCTGACCCT
GACCGTCTCC GCCTCTCCCT CACTCACGCC ACCAACCCTT CCAAAAGGAT TTTAGTCATT TTCTGCGGGC CAGGTTCTGT
GAAAGTTACT GCCATTCGGA ACATTGCGGG GCAGATTGTT AATAGAGACA CTTTGGGTGG TCTTATATTG ATAGTGGAGA
ATCATGTTAC TAGCCAGGCC TTGAAAGCCG TTGATCTTTT TCCCTTCAAG GTTGAAATTT TCCAGATCAC AGATTTGCTT
GTTAATATTA CAAAGCATGT GTTGAAGCCA AAGCATCAGG TGCTGACTGA TAGGCAGAAG AAAAATCTCC TGAAGAAGTT
CAATATAGAA GAAAAGCAGC TTCCCCGCAT GCTAAAGAGT GATGCAATTG CACGATATTA TGGACTTGAG AGGGGCCAAG
TAGTTAAAGT TACCTATAGT GGTGAAATCA CCCAGATGCA TGTCACATAT CGATGTGTGT GGTGA

>Vigan.04G264800.01
MAAEYGFELA RVGGEGEEQE EVKGCLSKFI DDGSVESHRY YLSRRTTLEM LRDRGYSIPS SEIDLSLSQF RHMHGHSPDP
DRLRLSLTHA TNPSKRILVI FCGPGSVKVT AIRNIAGQIV NRDTLGGLIL IVENHVTSQA LKAVDLFPFK VEIFQITDLL
VNITKHVLKP KHQVLTDRQK KNLLKKFNIE EKQLPRMLKS DAIARYYGLE RGQVVKVTYS GEITQMHVTY RCVW*