GBrowse Details

Vigan.04G265300.01

Basic Information:
Name: Vigan.04G265300.01
Multiple alignment
Variant Information
Position: Chr04:38543131..38550200 (- strand)
Length: 7070
Functional Information:
Description: Similar to Uncharacterized protein. [I1N8T9, Glycine max]
GO: Biological Process: 'de novo' L-methionine biosynthetic process (GO:0071266)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: cystathionine beta-lyase activity (GO:0004121)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (IPR000277)
Cystathionine beta-lyase, eukaryotic (IPR006238)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.25,2.88,11.47,16.32,12.94,10.63,10.72,8.39
Arabidopsis thaliana homolog: AT3G57050.1
Automatic updates:
Name: NM_001255097 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cystathionine beta-lyase, chloroplastic-like (LOC100786470), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:38543131..38543429 (- strand)
Length: 299
Type: three_prime_UTR
Position: Chr04:38543430..38543605 (- strand)
Length: 176
Type: CDS
Position: Chr04:38544019..38544121 (- strand)
Length: 103
Type: CDS
Position: Chr04:38544197..38544304 (- strand)
Length: 108
Type: CDS
Position: Chr04:38545470..38545587 (- strand)
Length: 118
Type: CDS
Position: Chr04:38546242..38546323 (- strand)
Length: 82
Type: CDS
Position: Chr04:38546763..38546859 (- strand)
Length: 97
Type: CDS
Position: Chr04:38547654..38547765 (- strand)
Length: 112
Type: CDS
Position: Chr04:38547902..38547989 (- strand)
Length: 88
Type: CDS
Position: Chr04:38548375..38548466 (- strand)
Length: 92
Type: CDS
Position: Chr04:38548571..38548641 (- strand)
Length: 71
Type: CDS
Position: Chr04:38549055..38549167 (- strand)
Length: 113
Type: CDS
Position: Chr04:38549249..38549426 (- strand)
Length: 178
Type: CDS
Position: Chr04:38549703..38549768 (- strand)
Length: 66
Type: CDS
Position: Chr04:38549769..38550200 (- strand)
Length: 432
Type: five_prime_UTR


>Vigan.04G265300.01
CCTTTTCCCA CTTGCTTCTC ACCAAAACTT TTGAGAGCAC TCATCCTACA TCTATTTCCC TTATAGGTGT CTCTTGGATC
TCATATCCCT ACTATTTTTA AATATTACAA TAACTTCATC AATGGCAAAA ACCATTCTTC CACTATCACA TTTTATTCTC
TCCTCAGCAG AGAAAAGAAG AGCAAAATTA AAACAGCCAA AATTTGTTGT CTAATTTTAA TTTAAAAACT AAAATGTTCT
AAAATTAGTA CATTATTTGC AGAAAACAAA ATTGGGAATT ATGAACCAAA TTTTCACCAA ATGAAATTCT TATAAAGTCC
CCCCACACAC CGAAATGGCG ACCAAATACA TAGAAATCGA AATCTAACAA TCCAACGCTA GCCCAAGCGC AGACAACATC
ATAGTACAGC TCCAAACATA TCAACTTCAA CAATGCTTTC TTCTGCAATT TCTCTGAAGC CCTTCCTTCA GTCACTCGTC
ATTGATCGTT ATGCCCAGAG CTCGACTGCT GCGACCAGGT GGGAGTGTTT GGGGTTTAAC AAGTCAGAAA ATTTCAGTAC
CAAGAGAGTG TTGTCTACTG AGGGGTTCAA GCTGTGTTGC TTGGTTGATA ACAGAGAGAT GGAGGTGGAG TCGTCATCCT
CATCTTTTGT GGACGATGCT GTCGTGAGCT TAAGTGAAGA GGATTTAGGG GAGCCTAGTA TCTCTACAAC AGTGATGAAT
TTTGAGAACA AGTTTGATCC TTTTGGAGCA ATTAGCCCCC CACTTTACCA AACTGCTACT TTTAAGCAGC CTTCTGCAAT
AGAAAACGGT CCCTATGACT ATACTAGAAG TGGAAATCCT ACTCGGGATG CTTTAGAAAG TTTACTGGCA AAACTTGATA
AAGCAGATAG AGCCTTGTGC TTCACCAGCG GAATGGCTGC TTTGACTGCT GTTGTTCATC TCATTGGAAC TGGTGAGGAA
ATTGTTGCTG GAGATGATGT ATATGGGGGC TCAGATAGGT TGCTGTCTCA AGTAGTTCCA AGGACTGGAG TTGTGGTGAA
ACGGATAAAT ACAAGTGATC TGAATGAGGT TGCATCTTCC ATTGGACCCA AGACTAAGCT TGTGTGGCTT GAGAGTCCAA
CCAATCCTCG GCTACAAATT TCTGATATTC GAAAAATAGC AGAGATGGCT CATTCACATG GTGCTCTTGT TTTAGTGGAC
AATAGTATCA TGTCACCTGT ATTGTCACGG CCATTAGAAC TTGGAGCAGA TATTGTCATG CACTCAGCTA CAAAATTTAT
TGGTGGACAT AGTGACATTA TGGCTGGTGT GCTTGCTGTG AAGGGTGAAA AGTTGGGAAA GGAATTGTAT TTCTTGCAGA
ATGCGGAGGG TTCAGGCTTA GCCCCATTTG ACTGTTGGCT TTGTATGCGA GGAATCAAGA CAATGGCCTT GAGAGTAGAA
AAGCAACAGG ATAATGCACA AAAGATTGCT GAGTTCCTTG CCTCCCATCC TCGAGTGAAG AAAGTGAATT ATGCTGGCTT
GCCTGATCAT CCCGGTCGTG ATTTGCATTA TTCTCAGGCA AAGGGTGCAG GATCTGTGCT TAGCTTCTTG ACTGGTTCAC
TGGCACTTTC AAGGCATATT GTTGAAACTA CCAAATACTT CAGCATAACC GTCAGCTTTG GGAGTGTTAA GTCCCTTATC
AGCATGCCAT GCTTTATGTC ACATGCAAGC ATACCTTCTG CAATTCGTGA GGCCAGGGGG TTGACTGAAG ATCTTGTACG
TATATCTGTG GGGATTGAGG ATGTGAATGA TCTCATTTCT GATCTAGACA ATGCACTAAG AACAGGGCCT CTTTAATTTT
TCTTTTTTTT TTTCACTTTT TCTTTTCTAT AATATACATC CTGAAGAAGT TGAATTTAGT AAGGATGTTG AAGATTTGGA
AGCATTGTTA TCCTGTCTTT GGATGCTTGA GGGTGGAAAC TTTAAATGTT TCTTCTTTAT ATGCATGTAA ACTAAATCAA
CATTTTCTGT AATTGTTGTC CTCGCCTCCA CTGATAAGGG GTCATTCAAA GATTAGTAAA AGTGTTGTCC TATGAAGATT
CAAAGAGCCT AGTACAAATT TGTCATCTTT GATATATTGT TTAGTTTTAC ATGTA

>Vigan.04G265300.01
ATGCTTTCTT CTGCAATTTC TCTGAAGCCC TTCCTTCAGT CACTCGTCAT TGATCGTTAT GCCCAGAGCT CGACTGCTGC
GACCAGGTGG GAGTGTTTGG GGTTTAACAA GTCAGAAAAT TTCAGTACCA AGAGAGTGTT GTCTACTGAG GGGTTCAAGC
TGTGTTGCTT GGTTGATAAC AGAGAGATGG AGGTGGAGTC GTCATCCTCA TCTTTTGTGG ACGATGCTGT CGTGAGCTTA
AGTGAAGAGG ATTTAGGGGA GCCTAGTATC TCTACAACAG TGATGAATTT TGAGAACAAG TTTGATCCTT TTGGAGCAAT
TAGCCCCCCA CTTTACCAAA CTGCTACTTT TAAGCAGCCT TCTGCAATAG AAAACGGTCC CTATGACTAT ACTAGAAGTG
GAAATCCTAC TCGGGATGCT TTAGAAAGTT TACTGGCAAA ACTTGATAAA GCAGATAGAG CCTTGTGCTT CACCAGCGGA
ATGGCTGCTT TGACTGCTGT TGTTCATCTC ATTGGAACTG GTGAGGAAAT TGTTGCTGGA GATGATGTAT ATGGGGGCTC
AGATAGGTTG CTGTCTCAAG TAGTTCCAAG GACTGGAGTT GTGGTGAAAC GGATAAATAC AAGTGATCTG AATGAGGTTG
CATCTTCCAT TGGACCCAAG ACTAAGCTTG TGTGGCTTGA GAGTCCAACC AATCCTCGGC TACAAATTTC TGATATTCGA
AAAATAGCAG AGATGGCTCA TTCACATGGT GCTCTTGTTT TAGTGGACAA TAGTATCATG TCACCTGTAT TGTCACGGCC
ATTAGAACTT GGAGCAGATA TTGTCATGCA CTCAGCTACA AAATTTATTG GTGGACATAG TGACATTATG GCTGGTGTGC
TTGCTGTGAA GGGTGAAAAG TTGGGAAAGG AATTGTATTT CTTGCAGAAT GCGGAGGGTT CAGGCTTAGC CCCATTTGAC
TGTTGGCTTT GTATGCGAGG AATCAAGACA ATGGCCTTGA GAGTAGAAAA GCAACAGGAT AATGCACAAA AGATTGCTGA
GTTCCTTGCC TCCCATCCTC GAGTGAAGAA AGTGAATTAT GCTGGCTTGC CTGATCATCC CGGTCGTGAT TTGCATTATT
CTCAGGCAAA GGGTGCAGGA TCTGTGCTTA GCTTCTTGAC TGGTTCACTG GCACTTTCAA GGCATATTGT TGAAACTACC
AAATACTTCA GCATAACCGT CAGCTTTGGG AGTGTTAAGT CCCTTATCAG CATGCCATGC TTTATGTCAC ATGCAAGCAT
ACCTTCTGCA ATTCGTGAGG CCAGGGGGTT GACTGAAGAT CTTGTACGTA TATCTGTGGG GATTGAGGAT GTGAATGATC
TCATTTCTGA TCTAGACAAT GCACTAAGAA CAGGGCCTCT TTAA

>Vigan.04G265300.01
MLSSAISLKP FLQSLVIDRY AQSSTAATRW ECLGFNKSEN FSTKRVLSTE GFKLCCLVDN REMEVESSSS SFVDDAVVSL
SEEDLGEPSI STTVMNFENK FDPFGAISPP LYQTATFKQP SAIENGPYDY TRSGNPTRDA LESLLAKLDK ADRALCFTSG
MAALTAVVHL IGTGEEIVAG DDVYGGSDRL LSQVVPRTGV VVKRINTSDL NEVASSIGPK TKLVWLESPT NPRLQISDIR
KIAEMAHSHG ALVLVDNSIM SPVLSRPLEL GADIVMHSAT KFIGGHSDIM AGVLAVKGEK LGKELYFLQN AEGSGLAPFD
CWLCMRGIKT MALRVEKQQD NAQKIAEFLA SHPRVKKVNY AGLPDHPGRD LHYSQAKGAG SVLSFLTGSL ALSRHIVETT
KYFSITVSFG SVKSLISMPC FMSHASIPSA IREARGLTED LVRISVGIED VNDLISDLDN ALRTGPL*