GBrowse Details

Vigan.04G273000.01

Basic Information:
Name: Vigan.04G273000.01
Multiple alignment
Variant Information
Position: Chr04:39250827..39256523 (+ strand)
Length: 5697
Functional Information:
Description: Similar to Transmembrane proteins 14C, putative isoform 1. [XP_007032574.1, Theobroma cacao]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Uncharacterised protein family UPF0136, Transmembrane (IPR005349)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.12,19.35,39.89,47.14,66.43,61.73,29.60,33.26
Arabidopsis thaliana homolog: AT3G57280.1
Automatic updates:
Name: NM_001253267 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100796521 (LOC100796521), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:39250827..39250964 (+ strand)
Length: 138
Type: five_prime_UTR
Position: Chr04:39250965..39251081 (+ strand)
Length: 117
Type: CDS
Position: Chr04:39252268..39252508 (+ strand)
Length: 241
Type: CDS
Position: Chr04:39255131..39255298 (+ strand)
Length: 168
Type: CDS
Position: Chr04:39255429..39255475 (+ strand)
Length: 47
Type: CDS
Position: Chr04:39255557..39255597 (+ strand)
Length: 41
Type: CDS
Position: Chr04:39256054..39256144 (+ strand)
Length: 91
Type: CDS
Position: Chr04:39256145..39256523 (+ strand)
Length: 379
Type: three_prime_UTR


>Vigan.04G273000.01
CAAAAAGTTA TTTTGGTATC TAAATTTATA GAGCCAAAGG CTCATGGGTA GGTGGCGGAT CGTTGACTGG TCTGTTTTTC
ACTCTCTTTT CCATAAAATC TTGTTTGTGT TCTGCACCGA ACCAACTCGA AGGCAGTGAT GAATGCAAAC ATGGCCGCGG
CTACCACGAT TTCTCAGCTC GGATGCTTCT CCGCCGTCCA CCGTAGCATA CACCTCCGCA GCCGCTCGCT TCTATTTCCT
TCTCCTCGCT CCAAGTTATC AGTTGTTATG AGTCTGGAGA GGCATGACAC AGATACTGCT GGGACTGATA CCAAAAATAC
ACTGAGTTAT GCAGCTGATG TGTCAAAGCT ACATGTTGAA GAAAAGCAGA ACTCGTATTC AACAAAAGAG GACCATGATA
CTGAAAAAAC AGGGGTTGGA CAGGAAATAC AAGGAAGTGT TGATCAACCG AAAAAGACTG CAAAAATCCA TGACTTCTGT
TTAGGCATTC CCTTTGGTGG TTTTGTTTTA ACTGGAGGGA TTGTTGGGTT CCTTTTTTCA CGGAGTCCTG CAACACTGAG
CAGTGGTGTG CTCTTTGGTG GTGCTTTACT GTTCCTCAGT ACCCTTAGCT TGAAGGTCTG GAGGCAAGGA AAATCGAGCT
TACCATTTAT TCTAGGACAA GCAGCATTGT CAGGGATTCT TATCTGGAAG AACTTCCAGA GTTACTCATT GGCAAAGAAA
ATATTTCCAA CTGGTTTTAG TGCTATTATA AGTTCTGCAA TGCTCTGCTT TTATTTCTAT GTGCTTATCT CTGGAGGAAA
TCCCCCACCT AAGAAATTGA AGCCATCTTC CAGCACTGCA TGATGAGATA GTCAAGGTTA TACTAGCTTA TAAAATATGG
AGATATAATA TCTTATTTTT CTGTGAATTG AAAATAAGGC TGTAAGCTAA TTTGGCCTTG TTGCTTTCGA AAATAGATCA
GCCAAGAGGT ACAACTGTGA TTATTGCATT AGATTCGTAG GGCTTTTGTG GAGTATACAC TAATAATATA AAATTTGATG
GAAAAGATAA TTTGTTTGTG CAACTACGTA GTTTCGATAC TTTGGTTATA GGGCACGTGG AATGAATAAA TATCCTGTTA
TTATTATTTT GGTATGATTG AGAATGAATC TCGTGCCTTC TGCCCAATGT GTTTAGGATT AAAAGAAATT ATTGAACATA
ACTCGAGGCC ACAATATATG CT

>Vigan.04G273000.01
ATGAATGCAA ACATGGCCGC GGCTACCACG ATTTCTCAGC TCGGATGCTT CTCCGCCGTC CACCGTAGCA TACACCTCCG
CAGCCGCTCG CTTCTATTTC CTTCTCCTCG CTCCAAGTTA TCAGTTGTTA TGAGTCTGGA GAGGCATGAC ACAGATACTG
CTGGGACTGA TACCAAAAAT ACACTGAGTT ATGCAGCTGA TGTGTCAAAG CTACATGTTG AAGAAAAGCA GAACTCGTAT
TCAACAAAAG AGGACCATGA TACTGAAAAA ACAGGGGTTG GACAGGAAAT ACAAGGAAGT GTTGATCAAC CGAAAAAGAC
TGCAAAAATC CATGACTTCT GTTTAGGCAT TCCCTTTGGT GGTTTTGTTT TAACTGGAGG GATTGTTGGG TTCCTTTTTT
CACGGAGTCC TGCAACACTG AGCAGTGGTG TGCTCTTTGG TGGTGCTTTA CTGTTCCTCA GTACCCTTAG CTTGAAGGTC
TGGAGGCAAG GAAAATCGAG CTTACCATTT ATTCTAGGAC AAGCAGCATT GTCAGGGATT CTTATCTGGA AGAACTTCCA
GAGTTACTCA TTGGCAAAGA AAATATTTCC AACTGGTTTT AGTGCTATTA TAAGTTCTGC AATGCTCTGC TTTTATTTCT
ATGTGCTTAT CTCTGGAGGA AATCCCCCAC CTAAGAAATT GAAGCCATCT TCCAGCACTG CATGA

>Vigan.04G273000.01
MNANMAAATT ISQLGCFSAV HRSIHLRSRS LLFPSPRSKL SVVMSLERHD TDTAGTDTKN TLSYAADVSK LHVEEKQNSY
STKEDHDTEK TGVGQEIQGS VDQPKKTAKI HDFCLGIPFG GFVLTGGIVG FLFSRSPATL SSGVLFGGAL LFLSTLSLKV
WRQGKSSLPF ILGQAALSGI LIWKNFQSYS LAKKIFPTGF SAIISSAMLC FYFYVLISGG NPPPKKLKPS SSTA*