VIGGS:GBrowse

Vigan.04G273200.01

Basic Information:

Name:	Vigan.04G273200.01 Multiple alignment Variant Information
Position:	Chr04:39290922..39293785 (+ strand)
Length:	2864

Functional Information:

Description:	Similar to Uncharacterized protein. [I1N8X2, Glycine max]
GO:	Biological Process: cytokinin metabolic process (GO:0009690)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614)
	Molecular Function: cytokinin dehydrogenase activity (GO:0019139)
	Molecular Function: flavin adenine dinucleotide binding (GO:0050660)
InterPro:	Oxygen oxidoreductase covalent FAD-binding site (IPR006093)
	FAD linked oxidase, N-terminal (IPR006094)
	Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (IPR015345)
	FAD-linked oxidase-like, C-terminal (IPR016164)
	FAD-binding, type 2 (IPR016166)
	FAD-binding, type 2, subdomain 1 (IPR016167)
	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (IPR016169)
	Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain (IPR016170)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.22,0.77,1.01,1.61,0.00,2.23,0.11,0.67
Arabidopsis thaliana homolog:	AT1G75450.1, AT2G41510.1, AT3G63440.1

Automatic updates:

Name:	NM_001257274 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cytokinin dehydrogenase 1-like (CKX1), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:39290922..39291027 (+ strand)
Length:	106
Type:	five_prime_UTR

Position:	Chr04:39291028..39291769 (+ strand)
Length:	742
Type:	CDS

Position:	Chr04:39292085..39292212 (+ strand)
Length:	128
Type:	CDS

Position:	Chr04:39292302..39292562 (+ strand)
Length:	261
Type:	CDS

Position:	Chr04:39292661..39292923 (+ strand)
Length:	263
Type:	CDS

Position:	Chr04:39293166..39293490 (+ strand)
Length:	325
Type:	CDS

Position:	Chr04:39293491..39293785 (+ strand)
Length:	295
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G273200.01
GGTTTTTTGA AAAAGAAGAG TAAGATGCAG CACTAGAAGG AATGGCTATA AAAGGAGTAA CTCCTTCAAT CTGTCCATGC
TCTTCCAAAC CATTCCTTAA CCTTCTATGC CCTGCCTTCC AAACCGATAC TCCTCTCTCT CACCTTCTTT TCTTATACAA
AGCAATTGTT TCATCAAAAT AGAAACCATG GTGTCAAAAC CTGGTGGCTT GTATGAACAA GGGAGCTTTC CATCAATCAA
AATCCTCATA CTTTTACTCC TTCATTCTAT ACTTCACAAA GCCAACTCAG GCTGCAACAA TAACTCTTCT TCAAGTTCCT
TGCTTCCATT TCCACCTCAT GAGATTCTCT CATCATTGCA AACACTTCCT CTAGATGGCT ACTTTAGCCT AAGTAACAAT
GAGGATGCTG CCAAGGACTT TGGCAACATA CACCATTTTC CTCCCCTAGC AGTGCTGCAT CCAAAAACAG TTTCTGATAT
ATCACGAACC ATAAAGCATG TTTTTGAAAT GGGGTTTGCC TCAGAGCTGA AGGTTGCTGC CAGAGGCCAT GGCCATTCCC
TGCAAGGCCA GGCACAGGCA AATGGGGGTC TAGTCATTAA CATGGAGTCT CTGCAGGGTC CTGAAATGAA AGTTCACGTT
GGAGAGTTCC CTTATGTGGA TGTCTCAGGG GGAGAGTTGT GGATAAACAT TCTGCATGAA ACTCTTAAAC ATGGGTTGGC
ACCAAAGTCA TGGACAGATT ACCTTCACCT CACTGTTGGA GGCACACTTT CAAATGCTGG TATAAGCGGC CAAGCCTTCA
AACATGGACC TCAGATCAAT AACATCTTTC AGCTTGAAGT GATCACAGGA AAAGGAGAGG TGGTTACCTG CTCAGGGAAC
CGAAATGCTG ACCTTTTTCA TGGTGTACTT GGAGGGCTTG GTCAATTCGG TATCATCACA AGGGCTAGAA TTTCTCTTGA
AACAGCACCA AAGATGGTGA AATGGATTAG AGTGCTCTAC TCAGAATTCT CTATATTTAC TAGGGATCAA GAGCATTTAA
TATCACTAAA AAACACATTT GATTATATTG AAGGGTTTGT GATCATAAAC AAAACTGGCA TCCTTAACAA TTGGAGATCA
TCCTTTGACC CCAAAAGTCC ACTTCAAGCT AGCCAATTCA ATTCTGATGG AAGAACCTTT TACTGTCTTG AGATGGCAAA
ATACTTCAAC CCTGATGAAG CAGAACTCAT GAATCAGAAT ATTGATCATC TATTATCAAA GCTGAGTTAC ATCCAACCAA
GTCTCTTCAG ATCAGAAGTT TCTTACGTGG AATTCCTAGA CAGAGTGCAT GTTTCTGAGA AAAAGCTAAG AGCAAAAGGC
TTGTGGGAAG TCCCCCATCC CTGGCTGAAC CTTCTGATCC CAAGAAGTGA GATTCATGAC TTTGCTGAAG AAGTATTTGG
CAAAATTCTT AAGGACACAA GTAATGGCCC CATACTCATT TACCCCGTCA ACCAAACAAG ATGGAACAGT AAGACATCTT
TGGTTACCCC AGAGGAAGAT GTTTTTTACC TGGTGGCTTT TCTATCCTCG GCAGTCCCAA ATTCTACTGG TGCAAACAGT
TTAGAACAGA TTGAAGCCCA AAACAAAAGG ATCATAGAAT TCTACACCAG TGCACAGCTG AAAGTGAAGC AATACCTTCC
CCATTACAGC ACACAGGAAG AATGGGAAGC CCACTTTGGG TCACAATGGG AGGCATTCGT GGAAAGAAAA AGGGCCTATG
ACCCACTAGC ACTGCTTGCC CCTGGCCACA GAATCTTTCA AAAGGCGGTG TCTGCTTCAT GCTAGTCTTA GTGTGTGCGT
GAGGTTGTGA ACTAATGCTA ATTAATCATG TATGTTTCTT CCCTGGCCTT CCTCTCAATA ATTGTGAGCG TGGCCAATGC
ATTTTCTATT CAAAAGGAGG CTTGCTTTTT AGGTCATCAT TACAAGATTG TCTCAGGAAA ACACCAATAG TCAGTTAGTA
GTGATATTTT AAGCTGATTG CAGGAAATTG TATGGCTAAA TTTAGGACCA CCCTTGTAAG ACAAAAATAT CAGCAAAGAA
AATTATTATT AAATGTAAAG AAAAGGTTAA ATAAAGAGAA

[show][hide][copy]CDS

>Vigan.04G273200.01
ATGCCCTGCC TTCCAAACCG ATACTCCTCT CTCTCACCTT CTTTTCTTAT ACAAAGCAAT TGTTTCATCA AAATAGAAAC
CATGGTGTCA AAACCTGGTG GCTTGTATGA ACAAGGGAGC TTTCCATCAA TCAAAATCCT CATACTTTTA CTCCTTCATT
CTATACTTCA CAAAGCCAAC TCAGGCTGCA ACAATAACTC TTCTTCAAGT TCCTTGCTTC CATTTCCACC TCATGAGATT
CTCTCATCAT TGCAAACACT TCCTCTAGAT GGCTACTTTA GCCTAAGTAA CAATGAGGAT GCTGCCAAGG ACTTTGGCAA
CATACACCAT TTTCCTCCCC TAGCAGTGCT GCATCCAAAA ACAGTTTCTG ATATATCACG AACCATAAAG CATGTTTTTG
AAATGGGGTT TGCCTCAGAG CTGAAGGTTG CTGCCAGAGG CCATGGCCAT TCCCTGCAAG GCCAGGCACA GGCAAATGGG
GGTCTAGTCA TTAACATGGA GTCTCTGCAG GGTCCTGAAA TGAAAGTTCA CGTTGGAGAG TTCCCTTATG TGGATGTCTC
AGGGGGAGAG TTGTGGATAA ACATTCTGCA TGAAACTCTT AAACATGGGT TGGCACCAAA GTCATGGACA GATTACCTTC
ACCTCACTGT TGGAGGCACA CTTTCAAATG CTGGTATAAG CGGCCAAGCC TTCAAACATG GACCTCAGAT CAATAACATC
TTTCAGCTTG AAGTGATCAC AGGAAAAGGA GAGGTGGTTA CCTGCTCAGG GAACCGAAAT GCTGACCTTT TTCATGGTGT
ACTTGGAGGG CTTGGTCAAT TCGGTATCAT CACAAGGGCT AGAATTTCTC TTGAAACAGC ACCAAAGATG GTGAAATGGA
TTAGAGTGCT CTACTCAGAA TTCTCTATAT TTACTAGGGA TCAAGAGCAT TTAATATCAC TAAAAAACAC ATTTGATTAT
ATTGAAGGGT TTGTGATCAT AAACAAAACT GGCATCCTTA ACAATTGGAG ATCATCCTTT GACCCCAAAA GTCCACTTCA
AGCTAGCCAA TTCAATTCTG ATGGAAGAAC CTTTTACTGT CTTGAGATGG CAAAATACTT CAACCCTGAT GAAGCAGAAC
TCATGAATCA GAATATTGAT CATCTATTAT CAAAGCTGAG TTACATCCAA CCAAGTCTCT TCAGATCAGA AGTTTCTTAC
GTGGAATTCC TAGACAGAGT GCATGTTTCT GAGAAAAAGC TAAGAGCAAA AGGCTTGTGG GAAGTCCCCC ATCCCTGGCT
GAACCTTCTG ATCCCAAGAA GTGAGATTCA TGACTTTGCT GAAGAAGTAT TTGGCAAAAT TCTTAAGGAC ACAAGTAATG
GCCCCATACT CATTTACCCC GTCAACCAAA CAAGATGGAA CAGTAAGACA TCTTTGGTTA CCCCAGAGGA AGATGTTTTT
TACCTGGTGG CTTTTCTATC CTCGGCAGTC CCAAATTCTA CTGGTGCAAA CAGTTTAGAA CAGATTGAAG CCCAAAACAA
AAGGATCATA GAATTCTACA CCAGTGCACA GCTGAAAGTG AAGCAATACC TTCCCCATTA CAGCACACAG GAAGAATGGG
AAGCCCACTT TGGGTCACAA TGGGAGGCAT TCGTGGAAAG AAAAAGGGCC TATGACCCAC TAGCACTGCT TGCCCCTGGC
CACAGAATCT TTCAAAAGGC GGTGTCTGCT TCATGCTAG

[show][hide][copy]PROTEIN

>Vigan.04G273200.01
MPCLPNRYSS LSPSFLIQSN CFIKIETMVS KPGGLYEQGS FPSIKILILL LLHSILHKAN SGCNNNSSSS SLLPFPPHEI
LSSLQTLPLD GYFSLSNNED AAKDFGNIHH FPPLAVLHPK TVSDISRTIK HVFEMGFASE LKVAARGHGH SLQGQAQANG
GLVINMESLQ GPEMKVHVGE FPYVDVSGGE LWINILHETL KHGLAPKSWT DYLHLTVGGT LSNAGISGQA FKHGPQINNI
FQLEVITGKG EVVTCSGNRN ADLFHGVLGG LGQFGIITRA RISLETAPKM VKWIRVLYSE FSIFTRDQEH LISLKNTFDY
IEGFVIINKT GILNNWRSSF DPKSPLQASQ FNSDGRTFYC LEMAKYFNPD EAELMNQNID HLLSKLSYIQ PSLFRSEVSY
VEFLDRVHVS EKKLRAKGLW EVPHPWLNLL IPRSEIHDFA EEVFGKILKD TSNGPILIYP VNQTRWNSKT SLVTPEEDVF
YLVAFLSSAV PNSTGANSLE QIEAQNKRII EFYTSAQLKV KQYLPHYSTQ EEWEAHFGSQ WEAFVERKRA YDPLALLAPG
HRIFQKAVSA SC*