VIGGS:GBrowse

Vigan.04G277300.01

Basic Information:

Name:	Vigan.04G277300.01 Multiple alignment Variant Information
Position:	Chr04:39799334..39801904 (+ strand)
Length:	2571

Functional Information:

Description:	Similar to Uncharacterized protein. [I1N8Z6, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.62,0.09,3.14,0.34,5.39,0.48,16.86,0.47
Arabidopsis thaliana homolog:	AT2G41690.1

Automatic updates:

Name:	BT098791 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-16B16 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001353424 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor Hsf-06 (GMHSF-06), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001353469 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 36 (HSF-36), transcript variant 2, mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:39799334..39799707 (+ strand)
Length:	374
Type:	five_prime_UTR

Position:	Chr04:39799708..39799947 (+ strand)
Length:	240
Type:	CDS

Position:	Chr04:39801185..39801643 (+ strand)
Length:	459
Type:	CDS

Position:	Chr04:39801644..39801904 (+ strand)
Length:	261
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G277300.01
AGTTGCTTTA TCACATTTAA TAAAACATAT GTATTTATAT TATTGGGTGT GCATTATTTT TAACTTTAGG GTAAAAGAAT
GTGCATGCCA TGTATAATAT ATATATGTAT AAATAAATAG GGTAGGCTTA GTTCTTACGT TTCAACTATT TATTCATTGT
GAGAGAGGTT GCTATAGCTA AGGAGAGAAA CAAGGAAAAT CAATTAAGGT CTTGCAATTC TCATGAACTG TGGAGTCGTG
TTGGGCTTCT ATTGTTGGGG TTGGGAGTTC TTAACTGCCC TTCTTCTCTT CTCTTCTTAT CATCCTTATT GATCTTTTCC
TTCTCTTCAA AACCAAAAAC TTACCATTCT TTCTTTTTAG ATAGAACCAC CAAAATGAAA ATAACAAATA ATAAAGGGTT
GTTGTTGGAA GGAGGAAGAA AGTCTACTCC ACCGCCGTTT TTGCTCAAGA CCTACATGCT TGTCGAGGAT CCGGCTACCG
ACAACGTTGT CTCGTGGAAT GTCGACGGGA CGGCGTTCGT GGTGTGGCAG CCGGCGGAGT TTGCTCGTGA TCTCCTCCCA
ACATTCTTCA AGCACAGCAA CTTCTCCAGC TTTGTGCGCC AACTAAATAC TTATGGTTTT CGTAAAGTTG CAACAAGTAG
ATGGGAGTTT TTCAATGAGA GGTTCAAGAA AGGTGAAAGA GAACAGCTAA ATGAGATTCA GAGAAGAAAA GCTTGGAGTA
ACAAGCAACA AGGAAATGGA GCAAACCAAG TGACAGCTCA TGATTCTGAT GAAGATCAAA GGTCATCATC AACTTCATCT
TCTTGTGGGT ACAGCACTCT GGTGGATGAA AACAAGAGGC TTAAGAAAGA GAATGGAGTG TTGAACTATG AGCTAACGAG
CATGAAAAGA AAGTGCAAGG AGCTGGTTGA TTTGGTGGCC AAATATTCAT CACATGCACA AGAGAAGGAA GAAGATGAAA
GGCCAATGCT GTTTGGAGTG AGGTTAGAGG TTGAAGGAGG GAGGGAGATT AAGAGGAATA GAGCTGAGAT GAGTGAAAGC
GCAAGCATTA TGCTGTCTCA GTCATGCAAA TAGATCTGCT ATATATATAT ATACATACGC ACATATATAT GTAGAAGCTT
AAAAGTGTTT CAGAATAGAT GATATACTGA AAGGAATAAT CATAAATTTG ATTAGTTAGC TAGGATTCTT GGAAAGAGTG
TTTGAGAATA CAAACGAAGA CACCCTCGAG CATATGCTGT AATTATGTAA TGTGAATTAG GAAGATGACA ACTATAAAAT
AGGCTCAGGA GGCCATTAAT TAGAGAATAA ACAAAAAAAA AGTGCATTGG ATAG

[show][hide][copy]CDS

>Vigan.04G277300.01
ATGAAAATAA CAAATAATAA AGGGTTGTTG TTGGAAGGAG GAAGAAAGTC TACTCCACCG CCGTTTTTGC TCAAGACCTA
CATGCTTGTC GAGGATCCGG CTACCGACAA CGTTGTCTCG TGGAATGTCG ACGGGACGGC GTTCGTGGTG TGGCAGCCGG
CGGAGTTTGC TCGTGATCTC CTCCCAACAT TCTTCAAGCA CAGCAACTTC TCCAGCTTTG TGCGCCAACT AAATACTTAT
GGTTTTCGTA AAGTTGCAAC AAGTAGATGG GAGTTTTTCA ATGAGAGGTT CAAGAAAGGT GAAAGAGAAC AGCTAAATGA
GATTCAGAGA AGAAAAGCTT GGAGTAACAA GCAACAAGGA AATGGAGCAA ACCAAGTGAC AGCTCATGAT TCTGATGAAG
ATCAAAGGTC ATCATCAACT TCATCTTCTT GTGGGTACAG CACTCTGGTG GATGAAAACA AGAGGCTTAA GAAAGAGAAT
GGAGTGTTGA ACTATGAGCT AACGAGCATG AAAAGAAAGT GCAAGGAGCT GGTTGATTTG GTGGCCAAAT ATTCATCACA
TGCACAAGAG AAGGAAGAAG ATGAAAGGCC AATGCTGTTT GGAGTGAGGT TAGAGGTTGA AGGAGGGAGG GAGATTAAGA
GGAATAGAGC TGAGATGAGT GAAAGCGCAA GCATTATGCT GTCTCAGTCA TGCAAATAG

[show][hide][copy]PROTEIN

>Vigan.04G277300.01
MKITNNKGLL LEGGRKSTPP PFLLKTYMLV EDPATDNVVS WNVDGTAFVV WQPAEFARDL LPTFFKHSNF SSFVRQLNTY
GFRKVATSRW EFFNERFKKG EREQLNEIQR RKAWSNKQQG NGANQVTAHD SDEDQRSSST SSSCGYSTLV DENKRLKKEN
GVLNYELTSM KRKCKELVDL VAKYSSHAQE KEEDERPMLF GVRLEVEGGR EIKRNRAEMS ESASIMLSQS CK*