GBrowse Details

Vigan.04G283400.01

Basic Information:
Name: Vigan.04G283400.01
Multiple alignment
Variant Information
Position: Chr04:40647211..40651693 (- strand)
Length: 4483
Functional Information:
Description: Similar to Uncharacterized protein. [C6T1F4, Glycine max]
GO: Biological Process: intracellular signal transduction (GO:0035556)
Cellular Component: membrane (GO:0016020)
InterPro: Cornichon (IPR003377)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.09,0.88,2.83,4.13,8.85,1.75,8.57,5.02
Arabidopsis thaliana homolog: AT3G12180.1
Automatic updates:
Name: NM_001250267 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cornichon superfamily protein (LOC100527262), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:40647211..40647881 (- strand)
Length: 671
Type: three_prime_UTR
Position: Chr04:40647882..40647927 (- strand)
Length: 46
Type: CDS
Position: Chr04:40649821..40649943 (- strand)
Length: 123
Type: CDS
Position: Chr04:40651003..40651184 (- strand)
Length: 182
Type: CDS
Position: Chr04:40651351..40651428 (- strand)
Length: 78
Type: CDS
Position: Chr04:40651429..40651693 (- strand)
Length: 265
Type: five_prime_UTR


>Vigan.04G283400.01
TTGCATTCAA ATGTGTAAAA TATTCCTTTT TTTCTTCAAA CGACATGATA TCCTGCTAAA AATAATGCTG TTTAAAAAAT
TGTAATTGTA ACTACATCAA ACAGGTAATG TGCAACTTGT CGTGTGGAGG CTTCACCACT TCGTCCGTGT TCAGTGTTCC
AACAAGGCAA CAACTCAAAC GTTGTCAACT GTTTGTTGAG GTTTCATCAG CTTCCTCCAA TCAATATATT CGACCTATCT
CTCTCTGCTT CTCTGTTAAT TCATAATGGG TTTGGAGTTG TTCTTTTGGC TTATCATTTG TTTCCCTTTC CACATCGTTT
TTTTAGCCTC AACGTTCTAC CAGGTTTTGA TGCTGACTGA CTTAGAAGCC GATTTTATCA ACCCATATGA TGCTTCATCA
AGGATTAATT ACTTCATCGT TCCTGAGTTT ATTGGGCAGG GATTGTTGTG CGCTTTCTGC CTTTTAACAG GTCACTGGAT
CATGTTTTTG TTGACGGTTC CTGTTACATG CTACCATGTG ATGCTGTACA TGAAACAGCA GCATCTCATC GATGTTACTG
AAGTGTTTAG AGCACTTAAC TCTGAGAAGA AATTTCGCTT GGCCAAACTT GCGTATTACT TAACAATCAT CATTATAACT
GTCTTCAGGC TTGTATTGAT GCTTGTCTAC TATTTAGATT CTGAAGATGA ATGATGTGGA CAAAGTTTTC AATTCCCACT
ACCGACTTTA CCACTATGGT TTAAGGTGGT GCTTCTTTTT CGTCTTATCC TTTTTTTAGT AATTCTTTTA TGAAGATGTG
ATTGAGTTCT ATAGCATAGG ATTTAGAACA CAAATTCACA GCTCTAAGAA ACAGAAATCC GTCACTAATT GAATGAGTAT
TGCCAACTAA GGTATGTCTT TAGTTATTTG ACTACAGTTG GTCATTCTCT CCTGAAATAG CTTACCAACT GATTTTTATG
GTAACTGATG ATTATGGAAT TAGAAGATGG TATTTGGCAA GGGTGCTTTG AACATTGTAT ATTATTTCCT CAGAATGTTA
CAACTTGTTA TAAAATACCG ACACCCAGTG TAAATTTAGC ATAAACTTAT TATGAAAAAG GTGAGTTGTA ATTATTGTCA
TGTCCACGGT CCTTGTGTTT ATTTATTTAT TTTATATTTG AAAGGCTAAT TATTCATTTA GGTGGAAAAT GCATCTTAGT
TATTTTAATT ACAAGGAGGT CCAGAAATAC TGTGATGAGA GATGTACATT AAATTTCAAT ACATGATTGT GCCGCTTGAG
ATATGCTTGT CACTAATATA ATTATCTTTG AACGTTTTGG GCTCTCAAGG AGGAAAATAA TGTGTTGTGT TGTGTTGGAG
ACACA

>Vigan.04G283400.01
ATGGGTTTGG AGTTGTTCTT TTGGCTTATC ATTTGTTTCC CTTTCCACAT CGTTTTTTTA GCCTCAACGT TCTACCAGGT
TTTGATGCTG ACTGACTTAG AAGCCGATTT TATCAACCCA TATGATGCTT CATCAAGGAT TAATTACTTC ATCGTTCCTG
AGTTTATTGG GCAGGGATTG TTGTGCGCTT TCTGCCTTTT AACAGGTCAC TGGATCATGT TTTTGTTGAC GGTTCCTGTT
ACATGCTACC ATGTGATGCT GTACATGAAA CAGCAGCATC TCATCGATGT TACTGAAGTG TTTAGAGCAC TTAACTCTGA
GAAGAAATTT CGCTTGGCCA AACTTGCGTA TTACTTAACA ATCATCATTA TAACTGTCTT CAGGCTTGTA TTGATGCTTG
TCTACTATTT AGATTCTGAA GATGAATGA

>Vigan.04G283400.01
MGLELFFWLI ICFPFHIVFL ASTFYQVLML TDLEADFINP YDASSRINYF IVPEFIGQGL LCAFCLLTGH WIMFLLTVPV
TCYHVMLYMK QQHLIDVTEV FRALNSEKKF RLAKLAYYLT IIIITVFRLV LMLVYYLDSE DE*