GBrowse Details

Vigan.04G284600.01

Basic Information:
Name: Vigan.04G284600.01
Multiple alignment
Variant Information
Position: Chr04:40719685..40721363 (+ strand)
Length: 1679
Functional Information:
Description: Similar to Uncharacterized protein. [V7CVT9, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Cellular Component: small ribosomal subunit (GO:0015935)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S10 (IPR001848)
Ribosomal protein S10, eukaryotic/archaeal (IPR005729)
Ribosomal protein S10, conserved site (IPR018268)
Ribosomal protein S10 domain (IPR027486)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:213.66,326.38,196.29,106.51,283.59,574.37,273.67,131.75
Arabidopsis thaliana homolog: AT3G47370.2
Automatic updates:
Name: NM_001248629 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S20 (LOC100306473), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250924 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499912 (LOC100499912), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251117 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein (LOC100500179), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001255098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S20-2-like (LOC100803623), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001349785 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S20-2 (LOC100500017), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001414430 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S20-2 (LOC100817306), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:40719685..40719706 (+ strand)
Length: 22
Type: five_prime_UTR
Position: Chr04:40719707..40719818 (+ strand)
Length: 112
Type: CDS
Position: Chr04:40719902..40720015 (+ strand)
Length: 114
Type: CDS
Position: Chr04:40720973..40721115 (+ strand)
Length: 143
Type: CDS
Position: Chr04:40721116..40721363 (+ strand)
Length: 248
Type: three_prime_UTR


>Vigan.04G284600.01
TTCTCTTCCC TGGGTGTGAA CAATGGCATA CGCTGCGATG AAACCCACCA AGCCCGGCTT GGAGGAATCT CAGGAACAGA
TTCACAAGAT AAGGATCACC CTATCTTCCA AGCACGTCAA AAATCTCGAG AAGGTTTGTT CGGACTTGGT TCGCGGTGCA
AAGGACAAGC GCCTCAGGGT CAAGGGACCA GTTAGGATGC CAACTAAGGT TCTTCACATC ACTACAAGGA AATCCCCTTG
CGGTGAAGGT ACCAACACAT GGGACAGATT TGAACTCCGT GTGCACAAGA GAGTCATTGA CCTTTACAGT TCCCCAGATG
TTGTAAAGCA GATTACCTCG ATCACAATTG AACCTGGTGT GGAGGTTGAG GTGACCATTG CAGACGCCTG ATCTTAATCC
AAATTTTAAT TGTTATGCTT CCTAGTTATT TCTCCATTAT TATTCTGTAT TTCTAAGTTT TGATAACCTG ACTGAGTTGG
TTTGTTTTAT CTAGTTTTAC GGTTGTAGAC ATTGATGAAA TACCAGAGAA ATGTTATCTG AAGAAATTCC AGAAACTATT
ATTATATAGT TGTTTTGAAA TTATTAAAAA ACACTTTTTT TCTGCCCTCA GTTATCATCA TTATGTCTTC ATTTTGTTA

>Vigan.04G284600.01
ATGGCATACG CTGCGATGAA ACCCACCAAG CCCGGCTTGG AGGAATCTCA GGAACAGATT CACAAGATAA GGATCACCCT
ATCTTCCAAG CACGTCAAAA ATCTCGAGAA GGTTTGTTCG GACTTGGTTC GCGGTGCAAA GGACAAGCGC CTCAGGGTCA
AGGGACCAGT TAGGATGCCA ACTAAGGTTC TTCACATCAC TACAAGGAAA TCCCCTTGCG GTGAAGGTAC CAACACATGG
GACAGATTTG AACTCCGTGT GCACAAGAGA GTCATTGACC TTTACAGTTC CCCAGATGTT GTAAAGCAGA TTACCTCGAT
CACAATTGAA CCTGGTGTGG AGGTTGAGGT GACCATTGCA GACGCCTGA

>Vigan.04G284600.01
MAYAAMKPTK PGLEESQEQI HKIRITLSSK HVKNLEKVCS DLVRGAKDKR LRVKGPVRMP TKVLHITTRK SPCGEGTNTW
DRFELRVHKR VIDLYSSPDV VKQITSITIE PGVEVEVTIA DA*