GBrowse Details

Vigan.04G284800.01

Basic Information:
Name: Vigan.04G284800.01
Multiple alignment
Variant Information
Position: Chr04:40730178..40736917 (- strand)
Length: 6740
Functional Information:
Description: Similar to transcription factor HBP-1b(c1)-like isoform X2. [XP_006604382.1, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Transcription factor TGA like domain (IPR025422)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.89,0.14,0.71,0.18,2.46,1.73,36.02,0.03
Arabidopsis thaliana homolog: AT5G06839.3
Automatic updates:
Name: NM_001358709 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bZIP transcription factor 6 (BZIP30), mRNA.
PubMed ID: 31156656 NCBI(pubmed)
18365246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:40730178..40730508 (- strand)
Length: 331
Type: three_prime_UTR
Position: Chr04:40730509..40730658 (- strand)
Length: 150
Type: CDS
Position: Chr04:40732946..40733185 (- strand)
Length: 240
Type: CDS
Position: Chr04:40733791..40734062 (- strand)
Length: 272
Type: CDS
Position: Chr04:40734151..40734226 (- strand)
Length: 76
Type: CDS
Position: Chr04:40734341..40734418 (- strand)
Length: 78
Type: CDS
Position: Chr04:40734552..40734611 (- strand)
Length: 60
Type: CDS
Position: Chr04:40734723..40734791 (- strand)
Length: 69
Type: CDS
Position: Chr04:40734962..40735084 (- strand)
Length: 123
Type: CDS
Position: Chr04:40735306..40735394 (- strand)
Length: 89
Type: CDS
Position: Chr04:40736128..40736231 (- strand)
Length: 104
Type: CDS
Position: Chr04:40736309..40736505 (- strand)
Length: 197
Type: CDS
Position: Chr04:40736506..40736917 (- strand)
Length: 412
Type: five_prime_UTR


>Vigan.04G284800.01
GTTGCAACCT CTTCTCTGGT TCTTTCAGAG ATATATAGGG TTGAACTTGA AGAGGGTGGT GCCCTCAGAG GACCGTTTAA
TCTGTAAAAA AAAAATTTGG TTTGCGAAAA GTCATCGTCT AGTTTGAAGA GAGAGAAAGT AGTGTAATAG AAAAGAGTGT
TGTCTTTTGT TAGTTTGTGA CTTTGCATTC AATTCCATTC TCTCTCTCTC TCTTCTGTGA CTCGCTACAA GCTATTCGAC
TATAACCGCC TCCCTCTTTT ACCGTGGAGG AAGAGAATGA TCTCAAGTGG AAGACAAAGA AGGCGGTTTC GCCATTGATG
GGGTTTTCGA GAGCTACTTT AAGAGAGAAC AAGAACAGGA GACAACATAA ACAACAGCAA TAACATCAAC CCTTTTAGGT
TCTTCTCTCG TCATGGCTTC CAAGACCACC AACCTAACAA CAAATAATCA ATTGGAACCA CTTCCACCAC CTCAGTACCG
TCACCCTCAT CCTCATCATT ATCAGTTACA ACAACACCAA CCCCAAAACC ATCAAGTTCA TGACCATCAA ATTTCTTTTG
GAATGATGCA ATCCTCTTCT TCGTCTTCTT CTATCCCTGG AAACTACCTC AGAGGCAAGG ATTCCGGGGC TTATGACTTG
GGTGAATTGG ATCAAGCCTT TTTCCTCTAC CTTGATGGAC AAGCAGACCC CTCCACTGTT CAAGACCAAA GACAGAACTC
ATCATCCGGA ATGAGGCCTC CGACTCTCAA CATTTTCCCA TCCAAGCCTA TGCACGTAGA GCCATCATCA TCCAAGTCCA
AGGCTAACAT AGAGTTAGTT TCTCCGCAAA CAAGTGGTTC AAAGAGACCA TCAGAGCCGT CGATGGAGTT GGCCAACCCT
CGAAACGAAG CTGCTTCTGC CCCTCAACCA CCCAAAGCTG TCAAGCGAGA GAGCAACCGC AAAGGTCCAA CGTCGAGTTC
TGAACAAGAA GGACCAAAAA CACCAGATCC TAAGACACTG AGAAGACTTG CTCAGAATAG AGAGGCAGCT AGGAAAAGCA
GGCTTAGGAA AAAGGCATAT GTTCAACAGC TAGAGTCAAG TAGGGTTAGG CTTAATCAGC TGGAACAAGA GCTACAACGT
GCTAGAACTC AGGGCATGTT CTTGGGTGGA GGTTCACTTT TGGGAGGAGA GCAAAGCCTC CCTGTTGCTA TGAATACCAT
TAGCTCGGAG GCTGCAATGT TTGACGTGGA ATATGCAAGA TGGGTTGAAG AACACCACCG CATAGTGTGT GAGCTAAGAG
CTGCAGTGCA AGAGCACCTT CCTGAGAACG AGCTTAGACT CTTTGTGGAC AATTGCTTGG CGCATTATGA CCAAGTAATG
AACCTCAAGA GCCTAGTGGC CAAAACAGAC GTGTTTCATC TGGTTTCTGG CATGTGGAAA ACCCCAGCTG AACGTTGCTT
CATGTGGATC GGAGGATTCA AGCCTTCTGA ACTCATTAAG ATTATTCTGA GTCAAATTGA GCCTCTGACG GAACAACAAA
TATTGGGTAT ATGTGGATTA CAACAATCGA CTCAAGAGGC AGAAGAGGCT CTCTCTCAAG GGCTCGAGGC TCTCAATCAA
TCTCTTTCGG ACACCATAAC TTCAGACTCT CTAAGCTATC CTCTCAATAT GGCTAACTAT ATGGGACAAA TGGCTGTGGC
CATGAACAAG CTCTCCACTC TCGAAGGTTT CGTTAGACAG GCAGATAATC TTCGGCACCA AACCATTCAC CGTCTGCATC
AACTCCTAAC GACGCGTCAA GCAGCAAGGT GTTTTCTGGC GATAGCCGAG TACTTCCATC GTCTTCGAGC TCTGAGTTCA
TTGTGGTTGG CACGCCCTCG TGTTGAATAG CAACGGCTAG TTCATGCATG CGTGGCATTA GTATTCCCTA CCTAGCTACC
TATATACAAT ATAATATAAT ATATAACATG CCCTTAATTT ATAGCTTCTT AAATTTCCGT TTAATTATAT AAATTTAAAT
GTTCTCTCTT TATTCTGGCA GCATTGCGCG GCACTGTAGA TAGACAGATA ATTATAGAAT TAAATGTTAA CAACTGTAAC
TCTTGAGGTA TTTTCTTTCT GCAAATTTCT CAAGGTATGT GTAGGAAGCC GTTTTTGTAA AAGATGTTGG GGGAGAATTA
ATGGATTATA GGTTGAGTAT AATAAAGATC AAAAGAAGTC T

>Vigan.04G284800.01
ATGGCTTCCA AGACCACCAA CCTAACAACA AATAATCAAT TGGAACCACT TCCACCACCT CAGTACCGTC ACCCTCATCC
TCATCATTAT CAGTTACAAC AACACCAACC CCAAAACCAT CAAGTTCATG ACCATCAAAT TTCTTTTGGA ATGATGCAAT
CCTCTTCTTC GTCTTCTTCT ATCCCTGGAA ACTACCTCAG AGGCAAGGAT TCCGGGGCTT ATGACTTGGG TGAATTGGAT
CAAGCCTTTT TCCTCTACCT TGATGGACAA GCAGACCCCT CCACTGTTCA AGACCAAAGA CAGAACTCAT CATCCGGAAT
GAGGCCTCCG ACTCTCAACA TTTTCCCATC CAAGCCTATG CACGTAGAGC CATCATCATC CAAGTCCAAG GCTAACATAG
AGTTAGTTTC TCCGCAAACA AGTGGTTCAA AGAGACCATC AGAGCCGTCG ATGGAGTTGG CCAACCCTCG AAACGAAGCT
GCTTCTGCCC CTCAACCACC CAAAGCTGTC AAGCGAGAGA GCAACCGCAA AGGTCCAACG TCGAGTTCTG AACAAGAAGG
ACCAAAAACA CCAGATCCTA AGACACTGAG AAGACTTGCT CAGAATAGAG AGGCAGCTAG GAAAAGCAGG CTTAGGAAAA
AGGCATATGT TCAACAGCTA GAGTCAAGTA GGGTTAGGCT TAATCAGCTG GAACAAGAGC TACAACGTGC TAGAACTCAG
GGCATGTTCT TGGGTGGAGG TTCACTTTTG GGAGGAGAGC AAAGCCTCCC TGTTGCTATG AATACCATTA GCTCGGAGGC
TGCAATGTTT GACGTGGAAT ATGCAAGATG GGTTGAAGAA CACCACCGCA TAGTGTGTGA GCTAAGAGCT GCAGTGCAAG
AGCACCTTCC TGAGAACGAG CTTAGACTCT TTGTGGACAA TTGCTTGGCG CATTATGACC AAGTAATGAA CCTCAAGAGC
CTAGTGGCCA AAACAGACGT GTTTCATCTG GTTTCTGGCA TGTGGAAAAC CCCAGCTGAA CGTTGCTTCA TGTGGATCGG
AGGATTCAAG CCTTCTGAAC TCATTAAGAT TATTCTGAGT CAAATTGAGC CTCTGACGGA ACAACAAATA TTGGGTATAT
GTGGATTACA ACAATCGACT CAAGAGGCAG AAGAGGCTCT CTCTCAAGGG CTCGAGGCTC TCAATCAATC TCTTTCGGAC
ACCATAACTT CAGACTCTCT AAGCTATCCT CTCAATATGG CTAACTATAT GGGACAAATG GCTGTGGCCA TGAACAAGCT
CTCCACTCTC GAAGGTTTCG TTAGACAGGC AGATAATCTT CGGCACCAAA CCATTCACCG TCTGCATCAA CTCCTAACGA
CGCGTCAAGC AGCAAGGTGT TTTCTGGCGA TAGCCGAGTA CTTCCATCGT CTTCGAGCTC TGAGTTCATT GTGGTTGGCA
CGCCCTCGTG TTGAATAG

>Vigan.04G284800.01
MASKTTNLTT NNQLEPLPPP QYRHPHPHHY QLQQHQPQNH QVHDHQISFG MMQSSSSSSS IPGNYLRGKD SGAYDLGELD
QAFFLYLDGQ ADPSTVQDQR QNSSSGMRPP TLNIFPSKPM HVEPSSSKSK ANIELVSPQT SGSKRPSEPS MELANPRNEA
ASAPQPPKAV KRESNRKGPT SSSEQEGPKT PDPKTLRRLA QNREAARKSR LRKKAYVQQL ESSRVRLNQL EQELQRARTQ
GMFLGGGSLL GGEQSLPVAM NTISSEAAMF DVEYARWVEE HHRIVCELRA AVQEHLPENE LRLFVDNCLA HYDQVMNLKS
LVAKTDVFHL VSGMWKTPAE RCFMWIGGFK PSELIKIILS QIEPLTEQQI LGICGLQQST QEAEEALSQG LEALNQSLSD
TITSDSLSYP LNMANYMGQM AVAMNKLSTL EGFVRQADNL RHQTIHRLHQ LLTTRQAARC FLAIAEYFHR LRALSSLWLA
RPRVE*