GBrowse Details

Vigan.04G286400.01

Basic Information:
Name: Vigan.04G286400.01
Multiple alignment
Variant Information
Position: Chr04:40882018..40886652 (- strand)
Length: 4635
Functional Information:
Description: Similar to Uncharacterized protein. [I1N972, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.01,24.79,6.15,6.42,8.97,6.11,8.78,5.00
Automatic updates:
Name: NM_001254129 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heterogeneous nuclear ribonucleoprotein A/B-like (LOC100776344), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:40882018..40882539 (- strand)
Length: 522
Type: three_prime_UTR
Position: Chr04:40882540..40882887 (- strand)
Length: 348
Type: CDS
Position: Chr04:40883593..40883668 (- strand)
Length: 76
Type: CDS
Position: Chr04:40884203..40884399 (- strand)
Length: 197
Type: CDS
Position: Chr04:40884927..40885070 (- strand)
Length: 144
Type: CDS
Position: Chr04:40885289..40885409 (- strand)
Length: 121
Type: CDS
Position: Chr04:40886494..40886618 (- strand)
Length: 125
Type: CDS
Position: Chr04:40886619..40886652 (- strand)
Length: 34
Type: five_prime_UTR


>Vigan.04G286400.01
GAGGTGTTGA GTGGAAGAAG GTGGAGAAGA AGACATGGAA GATTTGAAGA AGAGAAAACT GGACGAAGCA GGAAACGGTG
ATTTTGCCTC CAAGGAAGAA CTTCGCTTCC TCATTGAACC TCTTGCAAAA CCCCAGCTTG TTGATCTTCT AGCTAAATTA
GGGTCCCAAT ATCCTTCAAT TGCAGAAGAA ATAAAAAGTA TTGCAAGTGC TGATCCTGCC CATCGAAAGC TTTTTGTTCG
TGGCTTGGCA TGGAATACCA ATTCAGAAAC TTTGCGTGCT GCATTTGAAG AGCATGGAGA AATTGAGGAA GGAGCTGTGA
TCTATGATAA GGTAACAGGG AAGTCCCGTG GCTATGGATT TATTACTTTC AAAAATATGG AATCAACTCA GCAAGCATTG
AGAGCTTCTA GCAAGTTAAT TGATGGAAGA TTGGCTGTCT GTAATCTAGC CTGTGAGGGT CTAAGTGGAA CAAGTAGTGC
TCCTGATGTT TCCCTGAGGA AGCTTTATAT AGGAAGCTTA TCACCAGAAG TCACAAGTGA ACTGCTGCTC AACTATTTTG
CGAGGCATGG TGAAATAGAA GAAGGTTCAG TTGCATACGA CAGGGATACA AATGAATCAC GTGGCTTTGG CTTTGTCACG
TACAAGACAG CAGAAGCTGC CAAGAAGGCC ATAGATGATC TTGAAAAGAC TCTTGGGGGA AGGAATATAA TTGTAAAATA
TGCTGATTCC AACAAAGGAA AAACTGGGCA GCCGCCATTT CCCTCTGGAG TGGTTCCAAT GGCTGGCTTA CCTATGACCA
CAGGCTATAT GCAGCCTGGT AAAGCTCATG TAAGCTCTGG CCACCCTATA AATTACAATT ACCCCCAAAC TGTTGTACCG
TATTCCGCAT CTCCTTATCC AAACCCTCAC ATTGTACCTT CTCCTTATCC AACACAAGGG CAGATTCCTT ACCCTCCTCT
TTCTGCAAAG AAAGACCAAC ATGGGTTTCC GCCTACCCAA CCTGTAGGAA TGAACAACTA CCCTTATTAC TATCCCAAGC
AATGAATGCA TTTAACTGAA TCTGATGATT TTGACACTCC CTCTCTTTGC TTTTCTTTTC GAATCATTTT AGCTATTAGT
TACCTCTCAT ATCATAAGTC ATCACATCAC CTGTTAATGA ACCTCTGCAT CCTCTCTTTA CAGCTTTTCA TCTAGTTGAT
TTTTGGCATT CTTATTTATT ACTGTAATAT TGATTAGAAA TTTTTTATAT GTATTTTTTT TCTGAATATC TTGAACGGGA
GCAACATTTT TTTGTTTTTG CATTTAAGTT ACCTTTGAAT TTGCTACTCT TGAGTGTGGT TTATTTAGCC TCGCTGGACG
GCTTACATTT ATAAAATTTT CACCCCTTCC CCTGTTTGAC ATTTGTTCAT GAATCACACC ACATGGTCGC TGTTGCAGGG
ATGTCCATCA GGTGGCTCCT ACTACGCAGA ATCCATTCCC ATTCCTTGTT GTTTTTGAAC TTTAATGAAA ATAGACTTGG
AAAATTGTGT AGTAAAAAAT TAAAATTTTA AAAATACTAT AGTGACA

>Vigan.04G286400.01
ATGGAAGATT TGAAGAAGAG AAAACTGGAC GAAGCAGGAA ACGGTGATTT TGCCTCCAAG GAAGAACTTC GCTTCCTCAT
TGAACCTCTT GCAAAACCCC AGCTTGTTGA TCTTCTAGCT AAATTAGGGT CCCAATATCC TTCAATTGCA GAAGAAATAA
AAAGTATTGC AAGTGCTGAT CCTGCCCATC GAAAGCTTTT TGTTCGTGGC TTGGCATGGA ATACCAATTC AGAAACTTTG
CGTGCTGCAT TTGAAGAGCA TGGAGAAATT GAGGAAGGAG CTGTGATCTA TGATAAGGTA ACAGGGAAGT CCCGTGGCTA
TGGATTTATT ACTTTCAAAA ATATGGAATC AACTCAGCAA GCATTGAGAG CTTCTAGCAA GTTAATTGAT GGAAGATTGG
CTGTCTGTAA TCTAGCCTGT GAGGGTCTAA GTGGAACAAG TAGTGCTCCT GATGTTTCCC TGAGGAAGCT TTATATAGGA
AGCTTATCAC CAGAAGTCAC AAGTGAACTG CTGCTCAACT ATTTTGCGAG GCATGGTGAA ATAGAAGAAG GTTCAGTTGC
ATACGACAGG GATACAAATG AATCACGTGG CTTTGGCTTT GTCACGTACA AGACAGCAGA AGCTGCCAAG AAGGCCATAG
ATGATCTTGA AAAGACTCTT GGGGGAAGGA ATATAATTGT AAAATATGCT GATTCCAACA AAGGAAAAAC TGGGCAGCCG
CCATTTCCCT CTGGAGTGGT TCCAATGGCT GGCTTACCTA TGACCACAGG CTATATGCAG CCTGGTAAAG CTCATGTAAG
CTCTGGCCAC CCTATAAATT ACAATTACCC CCAAACTGTT GTACCGTATT CCGCATCTCC TTATCCAAAC CCTCACATTG
TACCTTCTCC TTATCCAACA CAAGGGCAGA TTCCTTACCC TCCTCTTTCT GCAAAGAAAG ACCAACATGG GTTTCCGCCT
ACCCAACCTG TAGGAATGAA CAACTACCCT TATTACTATC CCAAGCAATG A

>Vigan.04G286400.01
MEDLKKRKLD EAGNGDFASK EELRFLIEPL AKPQLVDLLA KLGSQYPSIA EEIKSIASAD PAHRKLFVRG LAWNTNSETL
RAAFEEHGEI EEGAVIYDKV TGKSRGYGFI TFKNMESTQQ ALRASSKLID GRLAVCNLAC EGLSGTSSAP DVSLRKLYIG
SLSPEVTSEL LLNYFARHGE IEEGSVAYDR DTNESRGFGF VTYKTAEAAK KAIDDLEKTL GGRNIIVKYA DSNKGKTGQP
PFPSGVVPMA GLPMTTGYMQ PGKAHVSSGH PINYNYPQTV VPYSASPYPN PHIVPSPYPT QGQIPYPPLS AKKDQHGFPP
TQPVGMNNYP YYYPKQ*