GBrowse Details

Vigan.04G288300.01

Basic Information:
Name: Vigan.04G288300.01
Multiple alignment
Variant Information
Position: Chr04:41040562..41045116 (+ strand)
Length: 4555
Functional Information:
Description: Similar to Heat shock protein binding protein, putative. [B9SXJ3, Ricinus communis]
InterPro: DnaJ domain (IPR001623)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.12,7.78,5.92,6.65,8.01,4.30,6.91,5.59
Arabidopsis thaliana homolog: AT2G42080.1
Automatic updates:
Name: NM_001254407 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807880 (LOC100807880), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:41040562..41040731 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr04:41040732..41040845 (+ strand)
Length: 114
Type: CDS
Position: Chr04:41041118..41041213 (+ strand)
Length: 96
Type: CDS
Position: Chr04:41043723..41043858 (+ strand)
Length: 136
Type: CDS
Position: Chr04:41044197..41044485 (+ strand)
Length: 289
Type: CDS
Position: Chr04:41044581..41044635 (+ strand)
Length: 55
Type: CDS
Position: Chr04:41044770..41044844 (+ strand)
Length: 75
Type: CDS
Position: Chr04:41044845..41045116 (+ strand)
Length: 272
Type: three_prime_UTR


>Vigan.04G288300.01
CTCAAATGTT TTGCCTAATG AATAAACCAC CATTTCAGAT AGTTTGTGGT CTTTGATGAC CATTCTGATT CTGGTTAGGT
CTAATTTAGG ATTATTCCAA TTTTCGTCTT AAACAAGTTC CATCGATAGC CCGAGGTGGG GCAAAACAAA GGACTCGAAT
TGCAGAGAAA ATGAGCAGCG CCATCTTCAA AGCTTCAACC AGCAATAATC TTCATTCCTC TCTCAGGGCA CTCTTCCATT
CAACCCCTCC CCTGCAACGT AAACGGCGCA ATTTTTGGGA CACCAGAGGC AACAATCATA ACTCCAGAAG GTTTAGACGG
ATGCAAGCAA AACATAGAGT AATGAACAGT ATCAATGATT ATGCAGAAAC CCTGTTTCAG AGCTGGAAGC AAGGTATTGA
TCGGGACGAG CTGCCATCAA GCCAGGACCC CTCATGGTTT CGTAAAAAGC AATATTTTGA TGGGGGCTCT GGAAGGTACA
GGAATGGCAA ACAAGGATCA AATCATCGGT ACAGAAGAGA TCCTTTGTTT TGTGAAGATG ATTTTGATGT GGAAACCATT
TTCCGTTCTG CCTTTGGTGG GAATAGATTC TTCTATTGGT CCTTCATCAA TGAGGAAAAT CCTCAGTGGA GGAGGGCTGA
ACGCTTCTCT AATTTTGGGA GATCATGGAA TTGGAGGCAT GAAAGCGAAA ATGATTATGA ATCTTCATCT GAGTCTGATA
GTTCTGGTTT AGATTTAACT CCGGATAGAT TAGCCCTTGG ATTGAGTGCT TCTGGTCCTC TGAAACTTGA GGATGTAAAA
AATGCGTACC GGGCCTGTGC TCTAAAATGG CATCCAGATC GTCATCAAGG CTCTTGCAAG GCTATAGCAG AAGAGAAGTT
CAAGCTTTGC AGTGCAGCTT ATCAATCTTT ATGTGATAAG CTGGCCTTGG ATTGAGGATC CTTCAGGCCT ATGCTAATCC
TTTTCTGGAA TTCTCGAGCC AGATCAAACC AGATCGTTGA CCGTGCTATA TTATTTAACA CAGCAATCCT GCTTTCACTG
TATTTTGTAG TTTTAAATAA TTTTATTAGA TGATCATGCA AATAACATGT ATACTATTTT ACGATTACAA ATGTACCATT
TTTTTGATAG GTCAAATGTA CCATTTTTTA CCATTTATTG TCTCAGCTAA TTATGTTAAG AATCTCTATT GTTCAAAGTT
ACTATTT

>Vigan.04G288300.01
ATGAGCAGCG CCATCTTCAA AGCTTCAACC AGCAATAATC TTCATTCCTC TCTCAGGGCA CTCTTCCATT CAACCCCTCC
CCTGCAACGT AAACGGCGCA ATTTTTGGGA CACCAGAGGC AACAATCATA ACTCCAGAAG GTTTAGACGG ATGCAAGCAA
AACATAGAGT AATGAACAGT ATCAATGATT ATGCAGAAAC CCTGTTTCAG AGCTGGAAGC AAGGTATTGA TCGGGACGAG
CTGCCATCAA GCCAGGACCC CTCATGGTTT CGTAAAAAGC AATATTTTGA TGGGGGCTCT GGAAGGTACA GGAATGGCAA
ACAAGGATCA AATCATCGGT ACAGAAGAGA TCCTTTGTTT TGTGAAGATG ATTTTGATGT GGAAACCATT TTCCGTTCTG
CCTTTGGTGG GAATAGATTC TTCTATTGGT CCTTCATCAA TGAGGAAAAT CCTCAGTGGA GGAGGGCTGA ACGCTTCTCT
AATTTTGGGA GATCATGGAA TTGGAGGCAT GAAAGCGAAA ATGATTATGA ATCTTCATCT GAGTCTGATA GTTCTGGTTT
AGATTTAACT CCGGATAGAT TAGCCCTTGG ATTGAGTGCT TCTGGTCCTC TGAAACTTGA GGATGTAAAA AATGCGTACC
GGGCCTGTGC TCTAAAATGG CATCCAGATC GTCATCAAGG CTCTTGCAAG GCTATAGCAG AAGAGAAGTT CAAGCTTTGC
AGTGCAGCTT ATCAATCTTT ATGTGATAAG CTGGCCTTGG ATTGA

>Vigan.04G288300.01
MSSAIFKAST SNNLHSSLRA LFHSTPPLQR KRRNFWDTRG NNHNSRRFRR MQAKHRVMNS INDYAETLFQ SWKQGIDRDE
LPSSQDPSWF RKKQYFDGGS GRYRNGKQGS NHRYRRDPLF CEDDFDVETI FRSAFGGNRF FYWSFINEEN PQWRRAERFS
NFGRSWNWRH ESENDYESSS ESDSSGLDLT PDRLALGLSA SGPLKLEDVK NAYRACALKW HPDRHQGSCK AIAEEKFKLC
SAAYQSLCDK LALD*