GBrowse Details

Vigan.04G289700.01

Basic Information:
Name: Vigan.04G289700.01
Multiple alignment
Variant Information
Position: Chr04:41179860..41181772 (+ strand)
Length: 1913
Functional Information:
Description: Similar to Uncharacterized protein. [K7MYG8, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.92,6.72,8.20,78.11,3.29,6.39,3.01,8.51
Automatic updates:
Name: NM_001252872 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thioredoxin-like 3-1, chloroplastic-like (LOC100783648), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:41179860..41180288 (+ strand)
Length: 429
Type: five_prime_UTR
Position: Chr04:41180289..41180599 (+ strand)
Length: 311
Type: CDS
Position: Chr04:41180701..41180775 (+ strand)
Length: 75
Type: CDS
Position: Chr04:41181056..41181122 (+ strand)
Length: 67
Type: CDS
Position: Chr04:41181226..41181243 (+ strand)
Length: 18
Type: CDS
Position: Chr04:41181368..41181466 (+ strand)
Length: 99
Type: CDS
Position: Chr04:41181467..41181772 (+ strand)
Length: 306
Type: three_prime_UTR


>Vigan.04G289700.01
TCTCTACTTG ATGTACCAAA ATAAGAAAGT GTGAAATCAA CATCTTCAAA CTCTCCCATT GAAATGCCTT ATAAAATAAA
CCAGTCTTCC AATTTCTATA TATCCGAAAT GCTTGGGCCA AAAATTCTTT ATCCTTCGAA TTTCTATATA TATTTTTTCC
ATGTCTTTCT TAACACACCT TCTGGATAAG CCTCCCCTTG CGTTGCGCCA TTTTCCCCAA CTTTTTCTTA TTAAAACTAA
ACACTATTTA TTGAATTTCA CCAATTCAGG TTCACAGAAT CCCAGATCAG CACCTGAGTC CATACTCTGT AACCCAAACC
TAAGAAACCA GGTAGAATGA TAGTGTTCCT TTTCCCTTAG CAATAAAGAA GACCATTTTC TTGATCGGCT TGTGCGTTGT
AAAGATCATA GCTTGGAGTG CAAAAGGGTA TGTCTGTAAT AGGGGCGTGT TCACAGTTTC TTTACGGAGA GGTTTATCAG
AGAGATGAAC AGTGGGCACA GTGCTTGGTG AGTGGGAGAG GGTATCTGTT TTGTCGCAGG AGTGGTGGGT GTGGGAACAT
ATGGGTTGGA AGCAGAAAGA GAGAAAGGAA GATGAAAAGA AGAAATTTTC GCGTGGAAGC TATGTGGCCA GATTTGTCAA
AACCAAGTGA AGTTGAGATG GAAGAAATCA CTGATTCCGA CCACCTCGAT CAAATTCTTC TTCTTGCCCA CGACAACTCA
CAACCTATCC TCATTGATTG GATGGCTACT TGGTGTCGGA AATGCATCTA TTTGAAGCCC AAGTTGGAAA AATTAGCAGC
TGAATATCTC GATAAAGTCA AATTTTATTA CGTGGATGTG AATAAAGTAC CCCAGACTCT AGTCAAGAGA GGAAACATAT
CTAAAATGCC AACAATTCAG CTGTGGAAAG ATGGAGAGAT GAAGGCAGAA GTGATTGGGG GCCATAAGGC CTGGCTAGTT
ACTGAAGAAG TCAGAGAAAT GATCCAAAAG TTCTTATGAT ACTTCTGTTT CCTCAGAAAA ACAAGAGACA ACAAAAGTTA
CAATTGAAGA AACTAGTCTT CCAATTTATA TATCTTTCTT GTTAATACTT TTTGTATGTT GGCAACTGCA TGTAGTTGTA
GGTTATATAT ATATTAATGG AATTCTGTAC CATAGCTGAA AGAAATTTAA CTGGGAAAAG AAGATGCTCG GTGTTTGTCC
CTCCCTCTCA CGCATTAGAG GAATAATACC AAGTTAAAAA CTTGCAATTG TTTTCTATTA GTGACAGAAA AATATTATTA
AAAATGGAGT TGAGGGAAGC ACATT

>Vigan.04G289700.01
ATGTCTGTAA TAGGGGCGTG TTCACAGTTT CTTTACGGAG AGGTTTATCA GAGAGATGAA CAGTGGGCAC AGTGCTTGGT
GAGTGGGAGA GGGTATCTGT TTTGTCGCAG GAGTGGTGGG TGTGGGAACA TATGGGTTGG AAGCAGAAAG AGAGAAAGGA
AGATGAAAAG AAGAAATTTT CGCGTGGAAG CTATGTGGCC AGATTTGTCA AAACCAAGTG AAGTTGAGAT GGAAGAAATC
ACTGATTCCG ACCACCTCGA TCAAATTCTT CTTCTTGCCC ACGACAACTC ACAACCTATC CTCATTGATT GGATGGCTAC
TTGGTGTCGG AAATGCATCT ATTTGAAGCC CAAGTTGGAA AAATTAGCAG CTGAATATCT CGATAAAGTC AAATTTTATT
ACGTGGATGT GAATAAAGTA CCCCAGACTC TAGTCAAGAG AGGAAACATA TCTAAAATGC CAACAATTCA GCTGTGGAAA
GATGGAGAGA TGAAGGCAGA AGTGATTGGG GGCCATAAGG CCTGGCTAGT TACTGAAGAA GTCAGAGAAA TGATCCAAAA
GTTCTTATGA 

>Vigan.04G289700.01
MSVIGACSQF LYGEVYQRDE QWAQCLVSGR GYLFCRRSGG CGNIWVGSRK RERKMKRRNF RVEAMWPDLS KPSEVEMEEI
TDSDHLDQIL LLAHDNSQPI LIDWMATWCR KCIYLKPKLE KLAAEYLDKV KFYYVDVNKV PQTLVKRGNI SKMPTIQLWK
DGEMKAEVIG GHKAWLVTEE VREMIQKFL*