GBrowse Details

Vigan.04G299800.01

Basic Information:
Name: Vigan.04G299800.01
Multiple alignment
Variant Information
Position: Chr04:42177952..42181072 (- strand)
Length: 3121
Functional Information:
Description: Similar to Uncharacterized protein. [I1N9I2, Glycine max]
GO: Molecular Function: intramolecular lyase activity (GO:0016872)
InterPro: Chalcone isomerase (IPR016087)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:168.83,81.79,36.86,35.55,49.38,53.15,4.70,20.20
Arabidopsis thaliana homolog: AT3G63170.1
Automatic updates:
Name: NM_001364455 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone isomerase (CHI3B2), mRNA.
PubMed ID: 25385351 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:42177952..42178236 (- strand)
Length: 285
Type: three_prime_UTR
Position: Chr04:42178237..42178370 (- strand)
Length: 134
Type: CDS
Position: Chr04:42179145..42179236 (- strand)
Length: 92
Type: CDS
Position: Chr04:42180027..42180276 (- strand)
Length: 250
Type: CDS
Position: Chr04:42180610..42180967 (- strand)
Length: 358
Type: CDS
Position: Chr04:42180968..42181072 (- strand)
Length: 105
Type: five_prime_UTR


>Vigan.04G299800.01
TTAATTTAAT AATATAACAA TAATTACGGG CGCGCGTGTG GTTATTTCCT TGCGGTGATG CCTTGCTTGT CTGCACTCTG
AATCGGTGGA ACTAACGAAG CCAAGATGGC GTCCATGCGC TTCCCTTTCT CTTTTCCTCA GCCCCAACCG CCTCAATTCC
CTCGCCCCTT CACCGCATTT GCTGTTGGTG CTGCCATCGC CGGTGCCTCC GCCGCCGTCG TGGCTGTCTC CTCCTCCTCC
GACCGCCCCT TTCTCAGGAA TGCCCTGAAT TCCGTCTTCT CTTCTGGCCA CTCGTTGCCT CTCTGGGGTT CACTCAGCTT
GGCCGACAGT GGGGTTTCCG TGCTTGAATC AAAGACTGGA ATTTCCTTCC CTTCGGTTCT AGCCTCTTCT CAAAAACTCT
GCGGAATTGG GTTGCGAAAA AAAAGCGTCT TGGGTTTGAA GAACATTGAT GTATACGCAT TTGGTGTTTA TGCTGATGAT
GATGACATAA AGACTCATCT TTCTGATAAA TATGGGAAGT TCTCCGCGTC TGAATTGCAG GGCAATAAGG AGTTTATTGA
CGATCTTATG GACAATGATA TACCCATGAC AGTTAGGCTT CAAATTGTGT ATGGGAGATT GAGCATTCGT TCTGTGCGTA
GTGCATTTGA AGAGTCTGTA GGAAGTAGGC TGCAGAAATT TGGGGGATCA GACAATAAAG AATTGCTTCA AAGGTTCACT
TCCCAGTTTA GAGATGAAAT AAAATTACCT CGTGGATCTG TAATTCATCT CTCAAGAGAG AAGGGCCATG TTCTTAACAC
CTCAATTGAT GGACAGGAAG TGGGAAGCAT CAAGAGTAAA CTCCTATGTA AGTCAATTTT AGATTTATAT TGTGGTGAAG
AAGCATTTGA TAAACAGGCC AAAGAAGAAA TTGAGCACAA CGTGGCTTCT TACCTCTAGA GGTAGAATCT TAGGCTTGGA
ATCATCTTTA AAACATGGAT TCTGAACCTT TTTTAATTCC CTGCTCTGAG TAATTTTTAG TTTATGCATA CCCGGAACTT
CAAGATTGCA ATATGAATTT ATTCATATTT CTATCAGCTA TCTTGTAAAA GAGGACTTTT CTGAACTCGT ACAAATCATA
ACGCATCTTC TAAGTGGGTT GACTAGACCT AGATTTGTTT TGTTGTGAAA ATGGAAATTT GATCCTCACT TTTGAGTTTA
AGCTTTTTTA CTGTACAGTG TCTC

>Vigan.04G299800.01
ATGGCGTCCA TGCGCTTCCC TTTCTCTTTT CCTCAGCCCC AACCGCCTCA ATTCCCTCGC CCCTTCACCG CATTTGCTGT
TGGTGCTGCC ATCGCCGGTG CCTCCGCCGC CGTCGTGGCT GTCTCCTCCT CCTCCGACCG CCCCTTTCTC AGGAATGCCC
TGAATTCCGT CTTCTCTTCT GGCCACTCGT TGCCTCTCTG GGGTTCACTC AGCTTGGCCG ACAGTGGGGT TTCCGTGCTT
GAATCAAAGA CTGGAATTTC CTTCCCTTCG GTTCTAGCCT CTTCTCAAAA ACTCTGCGGA ATTGGGTTGC GAAAAAAAAG
CGTCTTGGGT TTGAAGAACA TTGATGTATA CGCATTTGGT GTTTATGCTG ATGATGATGA CATAAAGACT CATCTTTCTG
ATAAATATGG GAAGTTCTCC GCGTCTGAAT TGCAGGGCAA TAAGGAGTTT ATTGACGATC TTATGGACAA TGATATACCC
ATGACAGTTA GGCTTCAAAT TGTGTATGGG AGATTGAGCA TTCGTTCTGT GCGTAGTGCA TTTGAAGAGT CTGTAGGAAG
TAGGCTGCAG AAATTTGGGG GATCAGACAA TAAAGAATTG CTTCAAAGGT TCACTTCCCA GTTTAGAGAT GAAATAAAAT
TACCTCGTGG ATCTGTAATT CATCTCTCAA GAGAGAAGGG CCATGTTCTT AACACCTCAA TTGATGGACA GGAAGTGGGA
AGCATCAAGA GTAAACTCCT ATGTAAGTCA ATTTTAGATT TATATTGTGG TGAAGAAGCA TTTGATAAAC AGGCCAAAGA
AGAAATTGAG CACAACGTGG CTTCTTACCT CTAG

>Vigan.04G299800.01
MASMRFPFSF PQPQPPQFPR PFTAFAVGAA IAGASAAVVA VSSSSDRPFL RNALNSVFSS GHSLPLWGSL SLADSGVSVL
ESKTGISFPS VLASSQKLCG IGLRKKSVLG LKNIDVYAFG VYADDDDIKT HLSDKYGKFS ASELQGNKEF IDDLMDNDIP
MTVRLQIVYG RLSIRSVRSA FEESVGSRLQ KFGGSDNKEL LQRFTSQFRD EIKLPRGSVI HLSREKGHVL NTSIDGQEVG
SIKSKLLCKS ILDLYCGEEA FDKQAKEEIE HNVASYL*