VIGGS:GBrowse

Vigan.04G304000.01

Basic Information:

Name:	Vigan.04G304000.01 Multiple alignment Variant Information
Position:	Chr04:42665491..42666940 (- strand)
Length:	1450

Functional Information:

Description:	Similar to histone H2A variant 1-like. [XP_003554274.1, Glycine max]
GO:	Biological Process: nucleosome assembly (GO:0006334)
	Cellular Component: nucleosome (GO:0000786)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: protein heterodimerization activity (GO:0046982)
InterPro:	Histone H2A (IPR002119)
	Histone core (IPR007125)
	Histone-fold (IPR009072)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.44,0.40,70.48,12.12,73.98,147.98,58.57,21.17

Automatic updates:

Name:	NM_001250079 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative histone H2A (LOC100306322), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250096 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306323 (LOC100306323), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:42665491..42665767 (- strand)
Length:	277
Type:	three_prime_UTR

Position:	Chr04:42665768..42666064 (- strand)
Length:	297
Type:	CDS

Position:	Chr04:42666693..42666806 (- strand)
Length:	114
Type:	CDS

Position:	Chr04:42666807..42666940 (- strand)
Length:	134
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G304000.01
CCGCGCCCCC GGCCCGCCTA TTGTTTGAGA AATAGGAATT TAAAGTGTTT ATTAGGATAG CTTTCGCATT CAACCACAGT
CACTATTGCA GCATCCTTCT TTTGCTTTGG TTTTCTAGGT TTCTCTCTGT ATCAATGGCG GGAAAAGGAG GGAAGGGGCT
CGTGGCTGGG AAAACCACCG CTGCCAACAA GGACAAAGAC AAGGATAAGA AAAGGCCTGT CTCTCGTTCA TCCCGTGCTG
GGATCCAGTT TCCAGTGGGG CGTATCCACA GGCAGTTGAA GCAAAGGGTG CAAGCCAATG GACGTGTGGG GGCAACTGCT
GCAGTATACT TGGCATCAAT TCTGGAATAT CTGACTGCTG AGGTTCTGGA GTTGGCTGGG AATGCAAGCA AGGATCTGAA
GGTGAAGAGG ATCACACCCA GACACTTGCA GCTGGCTATC AGGGGAGACG AGGAACTTGA CACCCTCATC AAAGGGACCA
TTGCTGGTGG TGGTGTCATC CCTCACATCC ACAAGTCCTT GATCAACAAG GCTGCCAAAG AATGAGACTC AATTTCCTCT
TTACTTTTCC TTTAATCTGT CTCTTTATTT ACCATCAGGT TGTGTGTTAG TTAGGTACTA GATTTTATTC TCTGTTTCTT
AAGAACAAGA TGTTAATGTT AGAGTGTAAA TGATCATTCT ATCTGTCTTT AACTTGGTTG ATGTACTACT CCTGGAATTG
TAATGCTGTT GGATTTAATG AGTTCTTTGT TTTAGCTTTA GCAAGTGATT TGTTTTTCTG ACTACTCACT CAACTCTCTG
GTTTTTTGCT TGTTATATTT TA

[show][hide][copy]CDS

>Vigan.04G304000.01
ATGGCGGGAA AAGGAGGGAA GGGGCTCGTG GCTGGGAAAA CCACCGCTGC CAACAAGGAC AAAGACAAGG ATAAGAAAAG
GCCTGTCTCT CGTTCATCCC GTGCTGGGAT CCAGTTTCCA GTGGGGCGTA TCCACAGGCA GTTGAAGCAA AGGGTGCAAG
CCAATGGACG TGTGGGGGCA ACTGCTGCAG TATACTTGGC ATCAATTCTG GAATATCTGA CTGCTGAGGT TCTGGAGTTG
GCTGGGAATG CAAGCAAGGA TCTGAAGGTG AAGAGGATCA CACCCAGACA CTTGCAGCTG GCTATCAGGG GAGACGAGGA
ACTTGACACC CTCATCAAAG GGACCATTGC TGGTGGTGGT GTCATCCCTC ACATCCACAA GTCCTTGATC AACAAGGCTG
CCAAAGAATG A

[show][hide][copy]PROTEIN

>Vigan.04G304000.01
MAGKGGKGLV AGKTTAANKD KDKDKKRPVS RSSRAGIQFP VGRIHRQLKQ RVQANGRVGA TAAVYLASIL EYLTAEVLEL
AGNASKDLKV KRITPRHLQL AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKAAKE*