GBrowse Details

Vigan.04G307800.01

Basic Information:
Name: Vigan.04G307800.01
Multiple alignment
Variant Information
Position: Chr04:43091391..43094987 (+ strand)
Length: 3597
Functional Information:
Description: Similar to Lesion inducing protein. [U5TZH0, Phaseolus vulgaris]
InterPro: HR-like lesion-inducer (IPR008637)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.59,22.72,29.11,6.96,12.92,24.41,34.03,10.10
Automatic updates:
Name: NM_001248526 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500514 (LOC100500514), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43091391..43091556 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr04:43091557..43091624 (+ strand)
Length: 68
Type: CDS
Position: Chr04:43093171..43093285 (+ strand)
Length: 115
Type: CDS
Position: Chr04:43093905..43093994 (+ strand)
Length: 90
Type: CDS
Position: Chr04:43094081..43094179 (+ strand)
Length: 99
Type: CDS
Position: Chr04:43094288..43094389 (+ strand)
Length: 102
Type: CDS
Position: Chr04:43094390..43094987 (+ strand)
Length: 598
Type: three_prime_UTR


>Vigan.04G307800.01
TTTTTCCCTA AAAGACTATA TCACCCCTCA TCGACCTTAT TTTCAATTTT CGCTTCGCAC GCTCTTTTCT CTCTCGTTCT
CGCTCTGACC GGGAAAAAGA AAAGAAAGAG CAGTTTTCTT CGCCCACCCT AGATTTTCTC TTTCTCCGTC TCTCTCTAAA
TTCTCAATGG CGTTCTCTTC GTTTCTCGGC AGAGTCCTCT TTGCGTCCGT TTTCATCCTC TCTGCTTACC AAGAATTTAA
TGCTTATGGG GTTGATGGCG GACCCGCAGC AAAAGCACTG AGACCGAAGT TTGATGCATT TGCCCAACAA GTACATTCTA
GAGTTGGATT TCAACTTCCG GATATCGATA TGAAGTTTTT AGTTGCTGGG GCTATTGCTC TCAAGGGCAT TGGAGGGATT
ATTTTCATAC TTGGCAGCTC TTTTGGAGCT CTCCTTTTGC TTTTGCACCA ATTGATTACT ACTCCTATAC TGTATGATTT
CTACAATTAT GACAGCGAGG ACAAAGAATT TATTCAACTT TTCATCAAAT TTACTCAGAA TATGGCCCTC TTCGGGGCTT
TGTTGTTTTT CGTTGGGATG AAAAACACCA TTCCTAGAAG GCAACCCAAG AAGAAGGCTC CCAAAACAAA AACTTATTAG
TTGCAATGAG TTCTTGGATT GTTCCTGGTT GCTCGTTACA CCCCTTTTCC AATTCTCCAG GATTTAATTT AGGTCTGTTT
CAGAACAAAT GCCCCCTAAT GAGTATTCAA TGTACCACCC ATGACGGATT ATATATTTAA TTTATAATTA TTTATATATG
TATGTTATTT TTTGGTTTGC TTGACATTAG GAACTATCTT TCGATAACTT GTATACGAAG AGGGAAAAAA TTACCAGAGC
CTGTTCATTC AGACTTTGAG TGCCAATTTC GTTATCTAGC GGATTTGATG GAAGGTAAAG TCTGACGGTT TCTATTTTAA
ATTAAGCTTG ATTTCTTCAC CTTGGCCCGT GGATTTGTGT TTCTTGTTTT TTATTTTTTG GTTCTCTTTT GGCATAGGAA
ATGAATGCTC ATTTGAATTT TTCACCCTAT GTGGTTAAAC ATACAGTAGA TTGTTAGCAA ATCAAGCTTT TGTGAAAAAA
ACTTATTCAC TTAACTTCCT GGGTTGATGT TGTATTCAAA ATAGACAAAA ACGTTTATAA ACGGTTAATG CATAAACTAC
CTGTAAGACT CTAATGGCTA ATAAAACTCC AATGGCTA

>Vigan.04G307800.01
ATGGCGTTCT CTTCGTTTCT CGGCAGAGTC CTCTTTGCGT CCGTTTTCAT CCTCTCTGCT TACCAAGAAT TTAATGCTTA
TGGGGTTGAT GGCGGACCCG CAGCAAAAGC ACTGAGACCG AAGTTTGATG CATTTGCCCA ACAAGTACAT TCTAGAGTTG
GATTTCAACT TCCGGATATC GATATGAAGT TTTTAGTTGC TGGGGCTATT GCTCTCAAGG GCATTGGAGG GATTATTTTC
ATACTTGGCA GCTCTTTTGG AGCTCTCCTT TTGCTTTTGC ACCAATTGAT TACTACTCCT ATACTGTATG ATTTCTACAA
TTATGACAGC GAGGACAAAG AATTTATTCA ACTTTTCATC AAATTTACTC AGAATATGGC CCTCTTCGGG GCTTTGTTGT
TTTTCGTTGG GATGAAAAAC ACCATTCCTA GAAGGCAACC CAAGAAGAAG GCTCCCAAAA CAAAAACTTA TTAG

>Vigan.04G307800.01
MAFSSFLGRV LFASVFILSA YQEFNAYGVD GGPAAKALRP KFDAFAQQVH SRVGFQLPDI DMKFLVAGAI ALKGIGGIIF
ILGSSFGALL LLLHQLITTP ILYDFYNYDS EDKEFIQLFI KFTQNMALFG ALLFFVGMKN TIPRRQPKKK APKTKTY*