GBrowse Details

Vigan.04G308800.01

Basic Information:
Name: Vigan.04G308800.01
Multiple alignment
Variant Information
Position: Chr04:43238563..43242027 (- strand)
Length: 3465
Functional Information:
Description: Similar to actin-depolymerizing factor-like. [XP_004493773.1, Cicer arietinum]
GO: Biological Process: actin filament depolymerization (GO:0030042)
Cellular Component: intracellular (GO:0005622)
Cellular Component: actin cytoskeleton (GO:0015629)
Molecular Function: actin binding (GO:0003779)
InterPro: Actin-binding, cofilin/tropomyosin type (IPR002108)
ADF/Cofilin/Destrin (IPR017904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:62.14,48.59,45.53,25.43,39.57,110.42,53.34,43.14
Arabidopsis thaliana homolog: AT2G31200.1
Automatic updates:
Name: NM_001249074 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527688 (LOC100527688), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001252728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max actin-depolymerizing factor 6-like (LOC100819975), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43238563..43239441 (- strand)
Length: 879
Type: three_prime_UTR
Position: Chr04:43239442..43239592 (- strand)
Length: 151
Type: CDS
Position: Chr04:43241302..43241567 (- strand)
Length: 266
Type: CDS
Position: Chr04:43241696..43241962 (- strand)
Length: 267
Type: CDS
Position: Chr04:43241963..43242027 (- strand)
Length: 65
Type: five_prime_UTR


>Vigan.04G308800.01
TAGATGGTTG TCTAATAAGT GAAAAATAAA AATAAAATAA AATAGAATAT ACGCGGCGAA GGGTTATGGC AAGCATTGAA
GAACGTGGGT CCCATGGGCG GTGGAAAATC CTTGTTCTTT TCGCAGATTC ACGTTCCCCA ATTCGACTTT GCGTTGCTAC
AACGCACCGC CCCAATCATA ATAACCTATT CTCATCTATT TTATTCACTC AACAATCTTT TCTTTGGCTC TTTATAATAA
TTTCTCTTCA CTCTTACCCT TCAATACTTC ACTTTCTTCT TCATCATCCA ACTTCACTCA TCATCATCAT GTCTTTCAGA
GGCCTAAGCA GGCCAAATGC TTCATCAGGC ATGGGTGTTG CTGATCACAG CAAAACCACC TTCATGGAAC TGAAGCAGAA
GAAGGTCCAT CGCTATGTGA TCTTTAAGGT TGATGAGAAG AAAAGGGAGG TTGTGGTTGA GAAGACCGGT GGCCCCGCTG
AGAGCTATGA TGATTTCGCT GCATCTTTGC CTGAGAATGA TTGCAGATAT GCTGTCTTTG ACTTCGATTT CGTCACTTCT
GAGAATTGTC AAAAGAGCAA AATCTTCTTC ATTGCATGGT CCCCTTCAAC TTCTCGGATT CGTGCCAAGA TGCTCTACGC
CACAACTAAA GACAGGTTAA GACGTGAGCT AGATGGTGTT CATTATGAAA TCCAGGCTAC TGACCCCACT GAAATGGATC
TTGAAGTGCT GAGAGAGCGT GCACATTGAA ATGTTTATGT ACTTGTTCAT TTTCTTTTCA GATTCTACTA GGTTTCTACT
TTCAATGAAT TGCAGAGCCC ATCTTGCCAC AATAATATGA ATCTGAAGGG GTATTGATTA AAAGCTCTTA GATGTCACTA
TTGTAAATCC CGATTTACTG GACCTGTATT GTAGAGCGTG ACTTTATGGA TCCAGATAGA TGTGGTGGAG ATAAAAGTCT
TTGCTTGTAA CTCTAGCTAA GAATATCTAG AAAATTTCAG AACTTGCATT TATTAATATT CTCTTCTTAA AATTAATCCT
GTGTTTGTGT TTGTGTTTGG TTTTGAGGAA GGGGAGCTAA GAAATACTGT GATGTTTGCT GGGAGGGAAG AGAATGAGAA
ATAATTAAAA AAAAATTAGG ACTCATTGGA CTATTTCTGA TTATTGTTTT CCGATAATAG GTGAAGAGAT TTGCGCGGGG
AAATGTTGGA CAAATTTGAC ACAAACAACA TTTTATACAA GACATCAAGA TAGTATCTTC AGCTTAAAAT CCTAAGGTTA
TATTTGACAC TGATGAAATA TAAACGTTTT ATAGTTTTAT ATAAGACATC AAAACATAAC GTAGGCTAAG CTACTGTTAG
GTCTTGAAAG AATCACATGC AACGAGCCTA ACATAAATGT ATAACTTGTT CGTTAGCAAG ATGGTGGATA GGTGTTCCAG
CCAAAGCCAA GTTGAAGGAG ATCAGTTCTT GAGCTTTACG ATATTTGTGT TTCTTTCTAG TGAAATTCCA AAATATAAGT
GCATCACATT CCTAAGTTGT ACTTGTTTCT AAGACTTTTG AAGTGAGTCT TCATCTGCGA GCTTCGATTC AAATATATGA
CTGCAAACTG TTTCAACTTA TGTTCCGG

>Vigan.04G308800.01
ATGGCAAGCA TTGAAGAACG TGGGTCCCAT GGGCGGTGGA AAATCCTTGT TCTTTTCGCA GATTCACGTT CCCCAATTCG
ACTTTGCGTT GCTACAACGC ACCGCCCCAA TCATAATAAC CTATTCTCAT CTATTTTATT CACTCAACAA TCTTTTCTTT
GGCTCTTTAT AATAATTTCT CTTCACTCTT ACCCTTCAAT ACTTCACTTT CTTCTTCATC ATCCAACTTC ACTCATCATC
ATCATGTCTT TCAGAGGCCT AAGCAGGCCA AATGCTTCAT CAGGCATGGG TGTTGCTGAT CACAGCAAAA CCACCTTCAT
GGAACTGAAG CAGAAGAAGG TCCATCGCTA TGTGATCTTT AAGGTTGATG AGAAGAAAAG GGAGGTTGTG GTTGAGAAGA
CCGGTGGCCC CGCTGAGAGC TATGATGATT TCGCTGCATC TTTGCCTGAG AATGATTGCA GATATGCTGT CTTTGACTTC
GATTTCGTCA CTTCTGAGAA TTGTCAAAAG AGCAAAATCT TCTTCATTGC ATGGTCCCCT TCAACTTCTC GGATTCGTGC
CAAGATGCTC TACGCCACAA CTAAAGACAG GTTAAGACGT GAGCTAGATG GTGTTCATTA TGAAATCCAG GCTACTGACC
CCACTGAAAT GGATCTTGAA GTGCTGAGAG AGCGTGCACA TTGA

>Vigan.04G308800.01
MASIEERGSH GRWKILVLFA DSRSPIRLCV ATTHRPNHNN LFSSILFTQQ SFLWLFIIIS LHSYPSILHF LLHHPTSLII
IMSFRGLSRP NASSGMGVAD HSKTTFMELK QKKVHRYVIF KVDEKKREVV VEKTGGPAES YDDFAASLPE NDCRYAVFDF
DFVTSENCQK SKIFFIAWSP STSRIRAKML YATTKDRLRR ELDGVHYEIQ ATDPTEMDLE VLRERAH*