GBrowse Details

Vigan.04G310600.01

Basic Information:
Name: Vigan.04G310600.01
Multiple alignment
Variant Information
Position: Chr04:43489804..43493230 (- strand)
Length: 3427
Functional Information:
Description: Similar to vacuolar protein sorting-associated protein 2 homolog 3-like. [XP_008382831.1, Malus domestica]
GO: Biological Process: protein transport (GO:0015031)
InterPro: Snf7 (IPR005024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.57,53.06,21.91,37.77,31.94,14.51,45.60,24.84
Automatic updates:
Name: NM_001250392 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306343 (LOC100306343), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250530 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499888 (LOC100499888), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43489804..43490151 (- strand)
Length: 348
Type: three_prime_UTR
Position: Chr04:43490152..43490277 (- strand)
Length: 126
Type: CDS
Position: Chr04:43490370..43490405 (- strand)
Length: 36
Type: CDS
Position: Chr04:43490999..43491079 (- strand)
Length: 81
Type: CDS
Position: Chr04:43491180..43491251 (- strand)
Length: 72
Type: CDS
Position: Chr04:43492105..43492176 (- strand)
Length: 72
Type: CDS
Position: Chr04:43492306..43492410 (- strand)
Length: 105
Type: CDS
Position: Chr04:43492522..43492572 (- strand)
Length: 51
Type: CDS
Position: Chr04:43492682..43492716 (- strand)
Length: 35
Type: CDS
Position: Chr04:43492847..43492891 (- strand)
Length: 45
Type: CDS
Position: Chr04:43493034..43493067 (- strand)
Length: 34
Type: CDS
Position: Chr04:43493068..43493230 (- strand)
Length: 163
Type: five_prime_UTR


>Vigan.04G310600.01
GGAGTAAGTG GAAGATGGGA AATAATAACA AACAAACAAA AAGTATATAT ATTAAAAAAA CATGAAAATT AGGATTAACA
AATTACGAGG ATTTCTTCTA TCCACGACCA TCGCTGTGCT GTGCGTGTCT CTTCCTAATT CCCTTCCACG GTGACCGATC
GCCATGAACA TCTTCTCCAA GAAACCCACT GCCAAAGAGG CCCTTCGTGA GAGTAAACGA GAAATGGCGA ACGCCACTAG
AGGTGTGGAG AAGGAAATTG GAGCACTACA ATTGGAAGAA AAGAAGCTTC TTGCTGAGAT AAAAAGAACT GCTAAGACAG
GCAATGAGGC AGCTACTAAA ATTCTAGCAC GCCAGTTGGT CAGGCTTAGG CAACAAATTG CCAATCTTCA AGGTAGTAGA
GCTCAGATGA GAGGCATAGC AACTCACACG CAGGCGATGC ATGCCCATTC TTCTGTTGCT GCTGGCATGA AAGGCGCTAC
AAAGGCAATG TCAGCTATCA ATAAGCAAAT GGAGCCAGCT AAGCAAGCTA AAATTATACA GGACTTCCAG AAACAGTCAG
CACAGATGGA TATGACTACT GAAATGATGT CCGATGCCAT AGATGATGCC TTGGATGATG ATGAAGCTGA AGAGGAAACT
GATGAACTGA CAAATCAGGT GCTGGATGAA ATTGGTGTGG ATGTTGCCTC ACAGTTATCA GCAGCCCCCA AAGGGAGAAT
TAGAACAAAG AATACTGAAG ATGTTAGCAG GTATCTTCTG TCTAACTGGT CATATATTTT AAAGAACCAA ACTTGGACCA
TTGTGTCTAT GAATAAGTAA AAATTTAGTC ATTTTTTTTA TTAATGTTTA TTTGATGCCC CTGCAGCTCG GGCATTGACG
AACTTGAGAA GCGTTTGGCA GCTCTAAGAA ACCCTTAATT TTTTGCCTGG GATTGTGATA GTTTTAAACA AAAATTCATT
CCTGGATCAT GTTTTACTGG GATTTGACAA GTTGAGTGTG TACATACATC TTTGATATTA TCATGTAGGA ATGATGATAT
ATCAAAATTG CTGAGATGGC AATTTACCAG CAGAAGTTTT AGTTGGGGAC ATAAAGAATA ATAAATAGTC TTAAGTTTGA
TGCTACTTTT ATGTAAACTG CCACGTTGAT TAATGCTGAG GCTAGCCG

>Vigan.04G310600.01
ATGAACATCT TCTCCAAGAA ACCCACTGCC AAAGAGGCCC TTCGTGAGAG TAAACGAGAA ATGGCGAACG CCACTAGAGG
TGTGGAGAAG GAAATTGGAG CACTACAATT GGAAGAAAAG AAGCTTCTTG CTGAGATAAA AAGAACTGCT AAGACAGGCA
ATGAGGCAGC TACTAAAATT CTAGCACGCC AGTTGGTCAG GCTTAGGCAA CAAATTGCCA ATCTTCAAGG TAGTAGAGCT
CAGATGAGAG GCATAGCAAC TCACACGCAG GCGATGCATG CCCATTCTTC TGTTGCTGCT GGCATGAAAG GCGCTACAAA
GGCAATGTCA GCTATCAATA AGCAAATGGA GCCAGCTAAG CAAGCTAAAA TTATACAGGA CTTCCAGAAA CAGTCAGCAC
AGATGGATAT GACTACTGAA ATGATGTCCG ATGCCATAGA TGATGCCTTG GATGATGATG AAGCTGAAGA GGAAACTGAT
GAACTGACAA ATCAGGTGCT GGATGAAATT GGTGTGGATG TTGCCTCACA GTTATCAGCA GCCCCCAAAG GGAGAATTAG
AACAAAGAAT ACTGAAGATG TTAGCAGGTA TCTTCTGTCT AACTGGTCAT ATATTTTAAA GAACCAAACT TGGACCATTG
TGTCTATGAA TAAGTAA

>Vigan.04G310600.01
MNIFSKKPTA KEALRESKRE MANATRGVEK EIGALQLEEK KLLAEIKRTA KTGNEAATKI LARQLVRLRQ QIANLQGSRA
QMRGIATHTQ AMHAHSSVAA GMKGATKAMS AINKQMEPAK QAKIIQDFQK QSAQMDMTTE MMSDAIDDAL DDDEAEEETD
ELTNQVLDEI GVDVASQLSA APKGRIRTKN TEDVSRYLLS NWSYILKNQT WTIVSMNK*