GBrowse Details

Vigan.04G312300.01

Basic Information:
Name: Vigan.04G312300.01
Multiple alignment
Variant Information
Position: Chr04:43629954..43633106 (- strand)
Length: 3153
Functional Information:
Description: Similar to Uncharacterized protein. [I1JP67, Glycine max]
GO: Molecular Function: acid phosphatase activity (GO:0003993)
InterPro: Acid phosphatase (Class B) (IPR005519)
Acid phosphatase, plant (IPR010028)
Vegetative storage protein/acid phosphatase (IPR014403)
HAD-like domain (IPR023214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.04,11.76,2.79,0.52,27.02,14.98,32.09
Arabidopsis thaliana homolog: AT1G04040.1
Automatic updates:
Name: NM_001255316 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max haloacid dehalogenase-like hydrolase (LOC100811100), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43629954..43630511 (- strand)
Length: 558
Type: three_prime_UTR
Position: Chr04:43630512..43630689 (- strand)
Length: 178
Type: CDS
Position: Chr04:43631308..43631517 (- strand)
Length: 210
Type: CDS
Position: Chr04:43632444..43632880 (- strand)
Length: 437
Type: CDS
Position: Chr04:43632881..43633106 (- strand)
Length: 226
Type: five_prime_UTR


>Vigan.04G312300.01
TTAAACTATA ATGTTGAACA ATTCACACTG TCTTTATGTA AATTTTACAT CATCTGTCAA ATTTCTACAC ACAAAATCAA
AAGGTGTATT AATGTGTTGG ACAAGAGCAT CACCTAGCTA ATATATCTCA CCGTGTCCCA CACTCCATTT CACGCCTATA
TGTATTTTCT TTACTCAGTT TCCTTTTCAC TGAATTCTTA CATCCCTCTC TGTCTCTTGT GTGCAAATGG CCAAGTGTCT
GGCACTCTCT CTGATCATAT TAGGCCTCTT CATTGGGTTG GTGAGTCCAC AATGGAACAT ACTGAACCTA GGATGGGGGA
AAAGGGTTGA GGAAGTGAAT CCAGAATGGA ACATACTGAA CCATATATTG AGAGAGAAAG TGGTTGGAGA CAACTTGAAG
AACTACTGTG AGAGTTGGAG GATCAATGTT GAACTAAACA ACATTAGAGG GTTCAGTGTT GTGCCTCAAG AATGTGTGGA
GCACGTGAAG AAGTACATGA CTTCATCTCA GTACAAAGCT GACTCTATGA GGGCAGTGGA GGAGATTAGG CTCTATCTCA
GTGGGTGCTG CACTTCGAAA GGTGATGGCA AAGATTCCTG GATTTTTGAT ATTGATGAGA CCCTTTTGTC CACAATTCCT
TATTATAAGA AGCATGGTTT TGGGGGAGAA AAGTTGAATT TAACATCTTT AGAAGCATGG ATGAAGCAAA GCAAGGCACC
AGCTCTTGAT CACACATTGG AGCTCTTTCA TGAAATAAAG AACAGAGGCT TCAAAATCTT TCTGGTTTCT TCAAGAAAGG
AAAGCCTTAG ATCTGCCACA GTAGACAACC TAGTCAATGT TGGGTACCAT GGTTGGACTA CTCTTAAATT GAGGGGTTTT
GATGATGAAT TGGTGGAAGT AAAAAAGTAC AATTCTAAGG TGAGACAAGA ATTGGTTGAC GAGGGTTATC GCATATGGGG
CATTGTTGGA GATCAATGGA GCACTTTTGA TGGACTTCCT ATCCCAAACA GAACATTCAA ATTACCAAAT TCCATTTACT
ACAAAGCATA AATTTCTTAC TCTCTACCAC TTATATATAA AAAAGCTTTT ACCTTTATCA CCATCACCAC AAGCTTTTGT
CCCTTCATCT ATGTCAAAGG TTTATCAAAT GGAACTCTTC TTACTCCATT GTGAAACAAA AAAACATGTG GGAAAAGAAA
AAAAGCTATT TATTAAAAAG GGTCATGCTA GCTTTAAAGA ATTCTATTTT CTACTTTTCT TCTTCACTAG GAATAGATGC
TATGTAAAAT ACATAAAAGC AACTTTCAAG TGTTGATGAC ATGGTTTTCA ATATGTTTTT GAACATCTAA TATTTATAGA
TTTCATTGAT CACTACTTAT TGTAAAACAA ATTGATTGAT TGGTTTTAGT GTGGTGTTGA CTTTCAATTA TGTTGTTTAA
AGTGGGTATT TGATACTTTG AAATAATCAT AACAATTTTA ATTGGGTTGT AAAACGGATT AACGTAATAA TTAAGGTTAA
TACTAAAATG TGGAAATAAT GTGGTCCCAT GGCCCAAATC CTTTTCATTT TCTCAAGTTG CTTGTTTTCT AGCTGTATTA
ATATCAAAT

>Vigan.04G312300.01
ATGGCCAAGT GTCTGGCACT CTCTCTGATC ATATTAGGCC TCTTCATTGG GTTGGTGAGT CCACAATGGA ACATACTGAA
CCTAGGATGG GGGAAAAGGG TTGAGGAAGT GAATCCAGAA TGGAACATAC TGAACCATAT ATTGAGAGAG AAAGTGGTTG
GAGACAACTT GAAGAACTAC TGTGAGAGTT GGAGGATCAA TGTTGAACTA AACAACATTA GAGGGTTCAG TGTTGTGCCT
CAAGAATGTG TGGAGCACGT GAAGAAGTAC ATGACTTCAT CTCAGTACAA AGCTGACTCT ATGAGGGCAG TGGAGGAGAT
TAGGCTCTAT CTCAGTGGGT GCTGCACTTC GAAAGGTGAT GGCAAAGATT CCTGGATTTT TGATATTGAT GAGACCCTTT
TGTCCACAAT TCCTTATTAT AAGAAGCATG GTTTTGGGGG AGAAAAGTTG AATTTAACAT CTTTAGAAGC ATGGATGAAG
CAAAGCAAGG CACCAGCTCT TGATCACACA TTGGAGCTCT TTCATGAAAT AAAGAACAGA GGCTTCAAAA TCTTTCTGGT
TTCTTCAAGA AAGGAAAGCC TTAGATCTGC CACAGTAGAC AACCTAGTCA ATGTTGGGTA CCATGGTTGG ACTACTCTTA
AATTGAGGGG TTTTGATGAT GAATTGGTGG AAGTAAAAAA GTACAATTCT AAGGTGAGAC AAGAATTGGT TGACGAGGGT
TATCGCATAT GGGGCATTGT TGGAGATCAA TGGAGCACTT TTGATGGACT TCCTATCCCA AACAGAACAT TCAAATTACC
AAATTCCATT TACTACAAAG CATAA

>Vigan.04G312300.01
MAKCLALSLI ILGLFIGLVS PQWNILNLGW GKRVEEVNPE WNILNHILRE KVVGDNLKNY CESWRINVEL NNIRGFSVVP
QECVEHVKKY MTSSQYKADS MRAVEEIRLY LSGCCTSKGD GKDSWIFDID ETLLSTIPYY KKHGFGGEKL NLTSLEAWMK
QSKAPALDHT LELFHEIKNR GFKIFLVSSR KESLRSATVD NLVNVGYHGW TTLKLRGFDD ELVEVKKYNS KVRQELVDEG
YRIWGIVGDQ WSTFDGLPIP NRTFKLPNSI YYKA*