VIGGS:GBrowse

Vigan.04G313200.01

Basic Information:

Name:	Vigan.04G313200.01 Multiple alignment Variant Information
Position:	Chr04:43695570..43698085 (- strand)
Length:	2516

Functional Information:

Description:	Similar to TPR domain protein. [G7KXF9, Medicago truncatula]
GO:	Biological Process: RNA processing (GO:0006396)
	Cellular Component: intracellular (GO:0005622)
	Molecular Function: protein binding (GO:0005515)
InterPro:	RNA-processing protein, HAT helix (IPR003107)
	Tetratricopeptide-like helical (IPR011990)
	Tetratricopeptide repeat-containing domain (IPR013026)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:88.50,45.89,24.89,104.69,41.28,41.07,15.21,26.16

Automatic updates:

Name:	KT031225 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_181 TPR transcription factor (Glyma03g32430.5) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:43695570..43696339 (- strand)
Length:	770
Type:	three_prime_UTR

Position:	Chr04:43696340..43696463 (- strand)
Length:	124
Type:	CDS

Position:	Chr04:43696573..43696745 (- strand)
Length:	173
Type:	CDS

Position:	Chr04:43697023..43697817 (- strand)
Length:	795
Type:	CDS

Position:	Chr04:43697818..43698085 (- strand)
Length:	268
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G313200.01
TTTCTTTTCT TCTCTTTCTC TTCCTTTTCC AACCGAAACA TTAGTTTTTT TGTGTTATCG AATGAGCAAT TAGTGTTATT
ACATTTCCTT GTATCCATGC CAATTTGTTT TCTGTTTGAA AAAATGACAT GCTTTATGCC TTTCTCTTCT CTAGTTTATT
GTTTTGGTTT TCCTGAAGAA GTAATTTGCA GTTTTGTTGT ATTTTGTCCA TGATTTGTAC CCAAAAGGCT AGCGACAGCC
ACACAGAAGT TATCTTGAAT CAGAAAACAT GCTGCTAAGA AGCTCTTCAA CGCCAGTTCT TGGATCCCTC CTTTCCAACT
TCACAGATAG TCCTAACAAC AGTATTCACT CAGAAACCAG CCATGCAATC AAGCACTTTC CACCAACCGG CGTTCCGCAA
CATTATCACA AACTTCATGT CCCCCAAACT GGGTCCTTCA CTCTCCCTTC CTTCTCATGT GGTTCTTCCC CAATCTCTCC
CTCAATTGGT GAGCTTGAAA GGAAAAACAA AGGCTTTAGA AGAGTTCAAT CTGATGGGAA CTTGCAAGAC TTAGCCTACT
CCTGCAACAA CGAAGACATT ATGGAATTTT CAGACCCTTC CAAGAGGTTT CCAACGAGGA ACAGGTGCTT GGTGCTGGAG
ACAATTCCTT CTTTCTCGCT TGGTAAGCAC AGCGGCTTGC GTCTAGAAGA GGAAGATGAA GAAATGGAAA GTGAGAGTGA
AGAAGGGGAG GAGAAGGGGG TAGAGGGGTT GAGTGTGGTG AATGGTGTGA TATTGAGTGA AGCTTGGAAA GCGAAAGATG
GCGTTTGCAG AGTGAGTTTC GGTGAGCAGG AAGAGGTTGG TGGTAAAGAA ATGTATCTTG CAAAGGGGCT TGGGGTAGAG
TGCTGTGGGG ATGGCATAGG TGGCTGCATA GGGGGTGGTG GAGGTAGTAG TGATCACAAT CCTTTGGGTT CTGGTGGGAA
TGATGGAGAT AGGCATGATG TGGAGGAGTA TTACAAGAAA ATGGTGAAAG AAAATCCAGG GGATCCTTTG TTTCTCAGGA
ATTATGCTAA TTTTTTGTAT CAGTGCAAAC AGGATCGTGA AGGAGCAGAG GAGTACTATT CTCGTGCCAT ACTGGCAGAC
CCAAATGATG GAGATGTTCT ATCACAGTAT GGGAAGCTGG TTTGGGAGGT ACACCATGAC CTAGAACGTG CCTCCGGCTA
TTTTGAAAGA GCAGTCCAAG CCTCTCCTGA AGACAGCCAT GTACATGCAG CATATGCTAG TTTCCTTTGG GACGCAGAGG
AAGAGGAAGA TGGTAACAAT GAAGCACAGT GTTTGCCGCC TCATTCTCAT CAAGGAGCTA TGGCTACAGC AGGTGCTTGA
ATTGGTGGAG TTGGAATGCA GAAGCGAGTG TCTTACCATC ATGTGTTGAA ATTCTTGTAT TGAAGCCAAT GTTGTAAGGG
ATGGTTCTGT TCAGAAAGCT GCACATTCTA TTAATAAGAC AAATCTACGA TCTCTAGCTT TGAGTTTCTG TAGCACAGTT
GGTTCTTTTC CTTTGTCAGG GTTGTGCACA AACTAATTAC TTAATCAACG TCTACTGATT GATTACACGT TTAATTCGGG
ACTAGTACTT GTATGTTTCA TCAAAGGCAC TGCACAGCTT AAGAAGGAGA ACATAGATTA GATGAAGAAA AGGGCATAAA
CTGAGGAAAC AACACATTAA GCCATTGTAC TACAAATGTC AGAACATTGA CGCAGGACGG AATTAAGGTT GTAAGTAATG
ATGAAGAAAA AGGTTCTGGA AGACCTCAAT CTGGCTGAGG ATATTTTAGG TGCAGAATAT AGAAAATAAT AGTCATGCTG
TTAAGGGTCT TCTTGGCCTG AATATGGAAA GGAGAAGAAG GAATTGAATG CTGTTGCTCA ATATCTTTAA TGGGTCTAAT
GGAAATACCA CTCCCTATTT CGTCAAATCA TGATACCCAC AGGAAATGAG AGCTACAAAG TATTAAACTG GTTTTTAATA
GCAAAGACCT GTTTAAACGA GATGATAGAT TTTATTTATA GAATATTATG GAACTTTACT TGGAAGTAAA AGGAAAAAAC
TTTGCTTCGC TTTCAATCAT TTTTAACATG TATATTAGTC CAGATAAAAG

[show][hide][copy]CDS

>Vigan.04G313200.01
ATGCTGCTAA GAAGCTCTTC AACGCCAGTT CTTGGATCCC TCCTTTCCAA CTTCACAGAT AGTCCTAACA ACAGTATTCA
CTCAGAAACC AGCCATGCAA TCAAGCACTT TCCACCAACC GGCGTTCCGC AACATTATCA CAAACTTCAT GTCCCCCAAA
CTGGGTCCTT CACTCTCCCT TCCTTCTCAT GTGGTTCTTC CCCAATCTCT CCCTCAATTG GTGAGCTTGA AAGGAAAAAC
AAAGGCTTTA GAAGAGTTCA ATCTGATGGG AACTTGCAAG ACTTAGCCTA CTCCTGCAAC AACGAAGACA TTATGGAATT
TTCAGACCCT TCCAAGAGGT TTCCAACGAG GAACAGGTGC TTGGTGCTGG AGACAATTCC TTCTTTCTCG CTTGGTAAGC
ACAGCGGCTT GCGTCTAGAA GAGGAAGATG AAGAAATGGA AAGTGAGAGT GAAGAAGGGG AGGAGAAGGG GGTAGAGGGG
TTGAGTGTGG TGAATGGTGT GATATTGAGT GAAGCTTGGA AAGCGAAAGA TGGCGTTTGC AGAGTGAGTT TCGGTGAGCA
GGAAGAGGTT GGTGGTAAAG AAATGTATCT TGCAAAGGGG CTTGGGGTAG AGTGCTGTGG GGATGGCATA GGTGGCTGCA
TAGGGGGTGG TGGAGGTAGT AGTGATCACA ATCCTTTGGG TTCTGGTGGG AATGATGGAG ATAGGCATGA TGTGGAGGAG
TATTACAAGA AAATGGTGAA AGAAAATCCA GGGGATCCTT TGTTTCTCAG GAATTATGCT AATTTTTTGT ATCAGTGCAA
ACAGGATCGT GAAGGAGCAG AGGAGTACTA TTCTCGTGCC ATACTGGCAG ACCCAAATGA TGGAGATGTT CTATCACAGT
ATGGGAAGCT GGTTTGGGAG GTACACCATG ACCTAGAACG TGCCTCCGGC TATTTTGAAA GAGCAGTCCA AGCCTCTCCT
GAAGACAGCC ATGTACATGC AGCATATGCT AGTTTCCTTT GGGACGCAGA GGAAGAGGAA GATGGTAACA ATGAAGCACA
GTGTTTGCCG CCTCATTCTC ATCAAGGAGC TATGGCTACA GCAGGTGCTT GA

[show][hide][copy]PROTEIN

>Vigan.04G313200.01
MLLRSSSTPV LGSLLSNFTD SPNNSIHSET SHAIKHFPPT GVPQHYHKLH VPQTGSFTLP SFSCGSSPIS PSIGELERKN
KGFRRVQSDG NLQDLAYSCN NEDIMEFSDP SKRFPTRNRC LVLETIPSFS LGKHSGLRLE EEDEEMESES EEGEEKGVEG
LSVVNGVILS EAWKAKDGVC RVSFGEQEEV GGKEMYLAKG LGVECCGDGI GGCIGGGGGS SDHNPLGSGG NDGDRHDVEE
YYKKMVKENP GDPLFLRNYA NFLYQCKQDR EGAEEYYSRA ILADPNDGDV LSQYGKLVWE VHHDLERASG YFERAVQASP
EDSHVHAAYA SFLWDAEEEE DGNNEAQCLP PHSHQGAMAT AGA*