GBrowse Details

Vigan.04G320900.01

Basic Information:
Name: Vigan.04G320900.01
Multiple alignment
Variant Information
Position: Chr04:44455610..44463745 (- strand)
Length: 8136
Functional Information:
Description: Similar to Uncharacterized protein. [I1NA10, Glycine max]
GO: Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: diaminopimelate epimerase activity (GO:0008837)
InterPro: Diaminopimelate epimerase, DapF (IPR001653)
Diaminopimelate epimerase, active site (IPR018510)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:86.67,139.27,55.63,63.68,72.27,185.31,73.67,47.46
Arabidopsis thaliana homolog: AT3G53580.1
Automatic updates:
Name: NM_001253263 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max diaminopimelate epimerase, chloroplastic-like (LOC100807528), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:44455610..44456015 (- strand)
Length: 406
Type: three_prime_UTR
Position: Chr04:44456016..44456132 (- strand)
Length: 117
Type: CDS
Position: Chr04:44459720..44459793 (- strand)
Length: 74
Type: CDS
Position: Chr04:44459897..44459956 (- strand)
Length: 60
Type: CDS
Position: Chr04:44461435..44461519 (- strand)
Length: 85
Type: CDS
Position: Chr04:44461902..44462081 (- strand)
Length: 180
Type: CDS
Position: Chr04:44462262..44462319 (- strand)
Length: 58
Type: CDS
Position: Chr04:44462641..44462711 (- strand)
Length: 71
Type: CDS
Position: Chr04:44463039..44463206 (- strand)
Length: 168
Type: CDS
Position: Chr04:44463281..44463547 (- strand)
Length: 267
Type: CDS
Position: Chr04:44463548..44463745 (- strand)
Length: 198
Type: five_prime_UTR


>Vigan.04G320900.01
TTTTAATAAT TAAATTTTTA AGTACGTTTT CTTCCCATAA ACCAGTAAAA TCTGAGAAAG AAAAAGCACA TCAACACACC
TATTTAACGG CCGAGATTGT GTACCGGAAG CCCTTAACGC TTCACTGTGT GCGACAGAGT CAAACCCAGA CGGTGACAGT
GGCAGATTGC AGTATCCGCC GCCATTCGAA GCTGCAGAAT GGCCATAACA GCCACCATTA CCGTTCCTCT CACATCCCCC
ACGCGCCGCA GTCTCACCTC CCTCAATAAT CTCTTCCTCC ACTCTCCCCG ATCCACTTTG CCCATTCCGC GACGCACTTT
CAAGTACCCT AACTCCCGCC TTGTCGCCTC CTCCATGAGC ACCGACGCCC CCGTCAAAAC CCCCTCCGCT TCCTTCCTCA
ACCGCCTACA GACCGGCTTT CTCCATTTCG CCAAGTACCA CGGCCTCGGA AACGACTTCA TTTTGGTTGA CAATAGAGAC
TCGTCCGAGC CCAGGATCAC TGCAGAGAAA GCGGTTCAAC TGTGTGATCG GAACTTCGGT GTTGGAGCTG ACGGAGTTAT
CTTTGTATTG CCTGGAATCA ATGGCACTGA TTATACCATG AGGATTTTTA ACTCTGATGG TAGTGAGCCT GAGATGTGTG
GCAATGGAGT GCGATGTTTT GCCAAATTCG TTTCTCAGCT AGAGAGTTTA GAAGGAAGGC ATAGTTTTAC CGTTCATACT
GGAGCTGGTC TTATTATACC TGAAGTCTTA GAGGATGGAA ATGTAAGAGT TGACATGGGG GAACCAGTTC TTAAAGCCTC
AGATGTGCCT ACTAAATTAC CTGCAAACAA GGATAGTGCT GTTGTTAAAT CCGAGCTAGT CGTGGATGGA GTTATCTGGC
ATGTGACCTG TGTTAGCATG GGAAATCCAC ACTGTGTAAC TTTCGGTAGA GAAGGATGTC AGAATTTGCT AGTTGATGAA
TTGAAGCTAG CAGAAATTGG CCCAAAATTT GAACATCATG AGGTGTTCCC AGCACGAACT AACACAGAGT TTGTGCAAGT
ATTGTCTAAG TCTCAGCTGA AAATGCGTGT TTGGGAGCGG GGAGCAGGAG CAACCCTAGC CTGTGGAACG GGAGCTTGTG
CTACTGTTGT TGCGGCTGTT CTTGAGGGTC ATGCTGGGAG GATATGCACG GTTGATCTAC CTGGAGGGCC TCTTCAGATT
GATTGGAGGG AGGAAGATAA TCATGTGTAT ATGACAGGCT CGGCCGATTT AGTTTATTAT GGATCTTTGC CTCTTTGATA
TGTTGCCCAT TGTTAAACGT AATAGTTGGG TGAATTAGGA ATTGCTGAAT AATCTTTCCT TGGGAGGCGG ACTTTTTGTT
TTTAATGAAT GTTTTATTTA CGAATTTAAT CTCAACCATT TGGTTGAACG AGTCACGATG ATGCAGTAAT GAGCTAAACG
GTACGTTGGC TTGTGTGGAT TTTAATGCTT TTTCATGATA GCAGGTTTTA AGATTGTAAA ATATGTAAAT TTGCTGTGCT
TCTAGGGTAC AAATGTTGAT TGGGATGATG TTAGCAGTGT AGTGGTTTCA AAAAACAAAT CTACTTATAT GTAAGATGGT
GAGAAAAAGA TACTGTTTTC AATTAAATGC TGCAATAGGT GGATATGTAC CTTATTTTGT TTCAAAATCT CTACTTGGAT
ACAA

>Vigan.04G320900.01
ATGGCCATAA CAGCCACCAT TACCGTTCCT CTCACATCCC CCACGCGCCG CAGTCTCACC TCCCTCAATA ATCTCTTCCT
CCACTCTCCC CGATCCACTT TGCCCATTCC GCGACGCACT TTCAAGTACC CTAACTCCCG CCTTGTCGCC TCCTCCATGA
GCACCGACGC CCCCGTCAAA ACCCCCTCCG CTTCCTTCCT CAACCGCCTA CAGACCGGCT TTCTCCATTT CGCCAAGTAC
CACGGCCTCG GAAACGACTT CATTTTGGTT GACAATAGAG ACTCGTCCGA GCCCAGGATC ACTGCAGAGA AAGCGGTTCA
ACTGTGTGAT CGGAACTTCG GTGTTGGAGC TGACGGAGTT ATCTTTGTAT TGCCTGGAAT CAATGGCACT GATTATACCA
TGAGGATTTT TAACTCTGAT GGTAGTGAGC CTGAGATGTG TGGCAATGGA GTGCGATGTT TTGCCAAATT CGTTTCTCAG
CTAGAGAGTT TAGAAGGAAG GCATAGTTTT ACCGTTCATA CTGGAGCTGG TCTTATTATA CCTGAAGTCT TAGAGGATGG
AAATGTAAGA GTTGACATGG GGGAACCAGT TCTTAAAGCC TCAGATGTGC CTACTAAATT ACCTGCAAAC AAGGATAGTG
CTGTTGTTAA ATCCGAGCTA GTCGTGGATG GAGTTATCTG GCATGTGACC TGTGTTAGCA TGGGAAATCC ACACTGTGTA
ACTTTCGGTA GAGAAGGATG TCAGAATTTG CTAGTTGATG AATTGAAGCT AGCAGAAATT GGCCCAAAAT TTGAACATCA
TGAGGTGTTC CCAGCACGAA CTAACACAGA GTTTGTGCAA GTATTGTCTA AGTCTCAGCT GAAAATGCGT GTTTGGGAGC
GGGGAGCAGG AGCAACCCTA GCCTGTGGAA CGGGAGCTTG TGCTACTGTT GTTGCGGCTG TTCTTGAGGG TCATGCTGGG
AGGATATGCA CGGTTGATCT ACCTGGAGGG CCTCTTCAGA TTGATTGGAG GGAGGAAGAT AATCATGTGT ATATGACAGG
CTCGGCCGAT TTAGTTTATT ATGGATCTTT GCCTCTTTGA 

>Vigan.04G320900.01
MAITATITVP LTSPTRRSLT SLNNLFLHSP RSTLPIPRRT FKYPNSRLVA SSMSTDAPVK TPSASFLNRL QTGFLHFAKY
HGLGNDFILV DNRDSSEPRI TAEKAVQLCD RNFGVGADGV IFVLPGINGT DYTMRIFNSD GSEPEMCGNG VRCFAKFVSQ
LESLEGRHSF TVHTGAGLII PEVLEDGNVR VDMGEPVLKA SDVPTKLPAN KDSAVVKSEL VVDGVIWHVT CVSMGNPHCV
TFGREGCQNL LVDELKLAEI GPKFEHHEVF PARTNTEFVQ VLSKSQLKMR VWERGAGATL ACGTGACATV VAAVLEGHAG
RICTVDLPGG PLQIDWREED NHVYMTGSAD LVYYGSLPL*