GBrowse Details

Vigan.04G322700.01

Basic Information:
Name: Vigan.04G322700.01
Multiple alignment
Variant Information
Position: Chr04:44678174..44681451 (+ strand)
Length: 3278
Functional Information:
Description: Similar to Uncharacterized protein. [I1NA32, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: RNA recognition motif domain (IPR000504)
Zinc finger, CCHC-type (IPR001878)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.01,101.16,52.13,53.35,50.70,43.24,44.97,36.72
Arabidopsis thaliana homolog: AT3G53500.2
Automatic updates:
Name: NM_001255687 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100813237 (LOC100813237), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361476 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif-containing protein (LOC100813237), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:44678174..44678228 (+ strand)
Length: 55
Type: five_prime_UTR
Position: Chr04:44678525..44678541 (+ strand)
Length: 17
Type: five_prime_UTR
Position: Chr04:44678542..44678645 (+ strand)
Length: 104
Type: CDS
Position: Chr04:44679551..44679590 (+ strand)
Length: 40
Type: CDS
Position: Chr04:44679758..44679853 (+ strand)
Length: 96
Type: CDS
Position: Chr04:44680283..44680470 (+ strand)
Length: 188
Type: CDS
Position: Chr04:44680589..44680693 (+ strand)
Length: 105
Type: CDS
Position: Chr04:44680843..44681209 (+ strand)
Length: 367
Type: CDS
Position: Chr04:44681210..44681451 (+ strand)
Length: 242
Type: three_prime_UTR


>Vigan.04G322700.01
AAGCAGATCC ACTTTGAAGG GTTAGGTTTG GACAGAAACA CCAATCCGTT CCAAGAGCTT GAAACAAAAA CGATGCCTCG
CCATGATGAT AAATACAATA CACGCCTGTA CGTGGGACGC TTGTCTCACA ATACCCGTTC CCGTGATCTG GAGCGTGCTT
TCAGCAGATA TGGAAGAGTT CGAGGTGTGG ATATGAAGAA CGATTTCGCC TTTGTTGAAT TTAGTGATCC TCGAGATGCG
GATGATGCCA GATTTAACTT GGATGGCCGT GACTTTGAAG GAAGTCGTAT TATTGTTGAA TTTGCCAAGG GGGGTCCTCG
AGGTTCCCGT GAATACTTGG GTAGGGGTCC ACCACCTGGA TCTGGACGAT GCTTTAACTG TGGCATTGAT GGTCATTGGG
CCAGAGATTG CAAAGCTGGG GATTGGAAAA ACAAATGCTA CCGCTGTGGG GAAAGAGGTC ATATAGAGAA GAACTGTAAG
AACAGTCCCA AAAAGTTGAG CAGCAGTAGG CGTGGGCGGA GTTTCTCACG ATCACCAGTC AGGTCATATT CTCCTCGTCG
TGGGAGAAGC AGGGATCGGA GCTACAGTCG TGACCGGAGC TACAGTCGAT CGAGATCTCC TGTCAGAAGA GCAAGAAGCC
CAGTCTCTGA AGATAGGTCA CATAGTCCTC GACCCTCCAA GATAAGGGAT CATAGTGCAT CACCTGACCG TGGCAGCCCA
CAGAAGAAAA GTGACATATC TCCCCGTAAT GATGATAGGT TGGTCACACA GCGAGATGGG TCTGACTTCA GTGATGGTCC
AAGAGGTAAA AGTAGAAGCC CTGCTAGCCC TGCAAGGAAC AACAATGAGA GGGGGTATGA TAGCCCAAAA TCTAATGGTC
GTAGCCGGAG CCCCAGCCGC AGCCCTAGGG ATGACAGGAG CCCCATTGAT GAAGATGATG ACAACCACCG TCGCTCACAG
TCACCACCTT AGATAGTGCT TTTTGTCAAG TGGTCAGGAT TGGCCCAGTT TATTATATCT GGATTAAAAA TTGCACTCCA
CTTTAATTTT GACTTGTGCT TATCAAAACG TTTTATGTAT GCATGCTATT ATTCGGATTC TTGCTGTTAA CTAGCTTGTG
TCATAGCTAG AATATGGTGC ATGACTTAGT TTCAAGGGTT GGGATATTTT AAACCATTAT AAATTATTGT GAGGAATTTA
ATCTTGCATG TTTT

>Vigan.04G322700.01
ATGCCTCGCC ATGATGATAA ATACAATACA CGCCTGTACG TGGGACGCTT GTCTCACAAT ACCCGTTCCC GTGATCTGGA
GCGTGCTTTC AGCAGATATG GAAGAGTTCG AGGTGTGGAT ATGAAGAACG ATTTCGCCTT TGTTGAATTT AGTGATCCTC
GAGATGCGGA TGATGCCAGA TTTAACTTGG ATGGCCGTGA CTTTGAAGGA AGTCGTATTA TTGTTGAATT TGCCAAGGGG
GGTCCTCGAG GTTCCCGTGA ATACTTGGGT AGGGGTCCAC CACCTGGATC TGGACGATGC TTTAACTGTG GCATTGATGG
TCATTGGGCC AGAGATTGCA AAGCTGGGGA TTGGAAAAAC AAATGCTACC GCTGTGGGGA AAGAGGTCAT ATAGAGAAGA
ACTGTAAGAA CAGTCCCAAA AAGTTGAGCA GCAGTAGGCG TGGGCGGAGT TTCTCACGAT CACCAGTCAG GTCATATTCT
CCTCGTCGTG GGAGAAGCAG GGATCGGAGC TACAGTCGTG ACCGGAGCTA CAGTCGATCG AGATCTCCTG TCAGAAGAGC
AAGAAGCCCA GTCTCTGAAG ATAGGTCACA TAGTCCTCGA CCCTCCAAGA TAAGGGATCA TAGTGCATCA CCTGACCGTG
GCAGCCCACA GAAGAAAAGT GACATATCTC CCCGTAATGA TGATAGGTTG GTCACACAGC GAGATGGGTC TGACTTCAGT
GATGGTCCAA GAGGTAAAAG TAGAAGCCCT GCTAGCCCTG CAAGGAACAA CAATGAGAGG GGGTATGATA GCCCAAAATC
TAATGGTCGT AGCCGGAGCC CCAGCCGCAG CCCTAGGGAT GACAGGAGCC CCATTGATGA AGATGATGAC AACCACCGTC
GCTCACAGTC ACCACCTTAG 

>Vigan.04G322700.01
MPRHDDKYNT RLYVGRLSHN TRSRDLERAF SRYGRVRGVD MKNDFAFVEF SDPRDADDAR FNLDGRDFEG SRIIVEFAKG
GPRGSREYLG RGPPPGSGRC FNCGIDGHWA RDCKAGDWKN KCYRCGERGH IEKNCKNSPK KLSSSRRGRS FSRSPVRSYS
PRRGRSRDRS YSRDRSYSRS RSPVRRARSP VSEDRSHSPR PSKIRDHSAS PDRGSPQKKS DISPRNDDRL VTQRDGSDFS
DGPRGKSRSP ASPARNNNER GYDSPKSNGR SRSPSRSPRD DRSPIDEDDD NHRRSQSPP*