GBrowse Details

Vigan.04G323000.01

Basic Information:
Name: Vigan.04G323000.01
Multiple alignment
Variant Information
Position: Chr04:44701250..44703483 (- strand)
Length: 2234
Functional Information:
Description: Similar to protein ALUMINUM SENSITIVE 3-like. [XP_004493920.1, Cicer arietinum]
InterPro: Conserved hypothetical protein CHP00245 (IPR005226)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,4.39,5.01,19.96,17.07,13.41,2.81
Arabidopsis thaliana homolog: AT2G37330.1
Automatic updates:
Name: MT917126 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Tamba ALUMINUM SENSITIVE 3-like protein mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001254536 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein ALUMINUM SENSITIVE 3-like (LOC100814304), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:44701250..44701411 (- strand)
Length: 162
Type: three_prime_UTR
Position: Chr04:44701412..44701723 (- strand)
Length: 312
Type: CDS
Position: Chr04:44702283..44702528 (- strand)
Length: 246
Type: CDS
Position: Chr04:44702865..44703185 (- strand)
Length: 321
Type: CDS
Position: Chr04:44703186..44703483 (- strand)
Length: 298
Type: five_prime_UTR


>Vigan.04G323000.01
TTCCGGGTAA TTTTGAGCTG AATAATAACC AGATTTTACA TGTAAAAGTT GACAGAAATC ATTAAAATTT CCCAGCAAGC
AATATTAATA TTGCAGAGAA GGAGAGTAGC TGAGAACTGT GAATTATGAA AAGAATAGTA GAATTGAATA ATTAAGTAAA
CTAAGATAAG GCCAAAATAG TGCTGAATCT GCTGCTGTGT CACGCAACTA AGAACTCTCA CTCCACATGG TGACTCGCAT
TCTGGGGAAG GTCTTTTCTG CTTTGGCCTT CACATATATG TTATCATAGC TATACCCTAT GTGTCATCAA ATATCCATCA
CCATGGATTC CTTCTTCTTC CTCAAACCCA TGCTAGCTTC TCAGAACCAC ACATTACAGC AGGGCACGGA TTGGTCATGG
CTGGTGGAGT TCCTCAAGGG CATGGTGAAG CCTGTGGCTG CTACAGCGGT GGTCTTTCTC GCTGTGGCCT TATCCTTCTA
CCAGAAGCTT GGCCTCGAGC TGGAAATGGT TGTTGCCATT CTGAGGGCAT TTATTCAACT TTCTATCATT GGCTTTGTGC
TGCAGTTCAT CTTCAACCAG GACAACGCTG GATGGATCCT TCTAGCTTAC CTTTTCATGG TAATAGTTGC TGGCTACACT
GCAGGTCAAC GTGCAAAAAA CGTGCCTAGA GGAAAGTATG TGGCTGGGGT TTCCATTCTC ACCGGAACTG CGGTGACCAT
GTTTGTGCTT GTGTTGCTGA GCGTGTTCCC TTTCACTCCC AGATATATAA TACCTATTGC TGGAATGATG GTTGGAAACG
CCATGACAGT AACTGGTGTT ACCATGAAAA GACTCCGAGA GGACATCAAA ACACAAATGA ACTTGGTTGA GACTGCATTG
GCGCTTGGTG CAACACCGCG AGAAGCAACG CACGAGCAAG TGAAAAGAGC AGTGATATTA GCTCTTTCAC CAGTGGTGGA
CAACACGAAA ACAGTAGGTT TAATATCCCT TCCTGGGGCA ATGACTGGTC TAATTATGGG AGGTGCCTCA CCATTGGAAG
CCATTCAACT GCAGATAGTG GTGATGAACA TGTTGATAGG TGCTGCAACT CTTAGCAGCA TAATGGCCAC ATACCTCTGT
TGGCCAGCAT TCTTCACCAA GGCCTATCAG CTCCAAACCA AAGTCTTCTT AACTTGATTT CTAACTTCAA CCCTTCATTT
CAAATTCATC CAATTATATA TATATGATTT TCAATTCCTA AAGGTAATTC AGTAGATGTT TACTCCAATC CTTCCTTCTT
GTGCAAATCT TCAAAATCTA AACTTTTCAA ATCTGGATAG ATCGCTTATT TAAAGCAAA

>Vigan.04G323000.01
ATGTGTCATC AAATATCCAT CACCATGGAT TCCTTCTTCT TCCTCAAACC CATGCTAGCT TCTCAGAACC ACACATTACA
GCAGGGCACG GATTGGTCAT GGCTGGTGGA GTTCCTCAAG GGCATGGTGA AGCCTGTGGC TGCTACAGCG GTGGTCTTTC
TCGCTGTGGC CTTATCCTTC TACCAGAAGC TTGGCCTCGA GCTGGAAATG GTTGTTGCCA TTCTGAGGGC ATTTATTCAA
CTTTCTATCA TTGGCTTTGT GCTGCAGTTC ATCTTCAACC AGGACAACGC TGGATGGATC CTTCTAGCTT ACCTTTTCAT
GGTAATAGTT GCTGGCTACA CTGCAGGTCA ACGTGCAAAA AACGTGCCTA GAGGAAAGTA TGTGGCTGGG GTTTCCATTC
TCACCGGAAC TGCGGTGACC ATGTTTGTGC TTGTGTTGCT GAGCGTGTTC CCTTTCACTC CCAGATATAT AATACCTATT
GCTGGAATGA TGGTTGGAAA CGCCATGACA GTAACTGGTG TTACCATGAA AAGACTCCGA GAGGACATCA AAACACAAAT
GAACTTGGTT GAGACTGCAT TGGCGCTTGG TGCAACACCG CGAGAAGCAA CGCACGAGCA AGTGAAAAGA GCAGTGATAT
TAGCTCTTTC ACCAGTGGTG GACAACACGA AAACAGTAGG TTTAATATCC CTTCCTGGGG CAATGACTGG TCTAATTATG
GGAGGTGCCT CACCATTGGA AGCCATTCAA CTGCAGATAG TGGTGATGAA CATGTTGATA GGTGCTGCAA CTCTTAGCAG
CATAATGGCC ACATACCTCT GTTGGCCAGC ATTCTTCACC AAGGCCTATC AGCTCCAAAC CAAAGTCTTC TTAACTTGA

>Vigan.04G323000.01
MCHQISITMD SFFFLKPMLA SQNHTLQQGT DWSWLVEFLK GMVKPVAATA VVFLAVALSF YQKLGLELEM VVAILRAFIQ
LSIIGFVLQF IFNQDNAGWI LLAYLFMVIV AGYTAGQRAK NVPRGKYVAG VSILTGTAVT MFVLVLLSVF PFTPRYIIPI
AGMMVGNAMT VTGVTMKRLR EDIKTQMNLV ETALALGATP REATHEQVKR AVILALSPVV DNTKTVGLIS LPGAMTGLIM
GGASPLEAIQ LQIVVMNMLI GAATLSSIMA TYLCWPAFFT KAYQLQTKVF LT*