VIGGS:GBrowse

Vigan.04G324500.01

Basic Information:

Name:	Vigan.04G324500.01 Multiple alignment Variant Information
Position:	Chr04:44756501..44760040 (- strand)
Length:	3540

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JPH9, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:7.97,10.60,10.07,8.28,18.50,9.36,19.68,12.59
Arabidopsis thaliana homolog:	AT5G02800.1, AT5G13160.1, AT5G18610.1

Automatic updates:

Name:	NM_001250788 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein kinase-like protein (LOC100499648), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:44756501..44756872 (- strand)
Length:	372
Type:	three_prime_UTR

Position:	Chr04:44756873..44757139 (- strand)
Length:	267
Type:	CDS

Position:	Chr04:44757471..44757862 (- strand)
Length:	392
Type:	CDS

Position:	Chr04:44757956..44758145 (- strand)
Length:	190
Type:	CDS

Position:	Chr04:44758352..44758542 (- strand)
Length:	191
Type:	CDS

Position:	Chr04:44759336..44759435 (- strand)
Length:	100
Type:	CDS

Position:	Chr04:44759436..44760040 (- strand)
Length:	605
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G324500.01
CTTATATTTT CTTTATCATT CAGTTAGAGT TAAATTGCAT CACATGTTGA AATTAAATGA ACCTTATTGC TTTTTCATTA
AAATGGCAAG TAGGAAATTG TTCCAACAAA AGCACAAAGC ATCTAATTTT ATAGATTCTT ATTGTAGATC TTAAGCAGTG
TGTAGAGGGC AAATAGAAGT GCCAAGCATG ACAGAAATTA ACTTAATATC AAAGCAATTA TTTTATGTTT AGACAAAAAG
GGGAAACATA TATAATTTTT TTATGAGATT GGTTTTGGAG TTGATTTTGG AGGTGATCCA GTGAGGCGCA TTTGAACCAA
TCATGGTGTT TTTCCGACCA AAAGAGAAGG CAATGAATAA ATTAATGAAC TCAACCTAAA ACACTAGGGA AATATAAAAA
CAGAAAAATA TAGAACACAA GACACAGACA CATGATAAAA GTAAACATAG AGAGAGAAAG AACAAAGGCT GTTTTCTAAG
TTGTTTTTGT TGCAGTTGGC TGCCCAAGAA CCGTGTCGTC GGGTCGGGTC GGGTCCAGAG AGAGTTATTT GCCGTTTCAT
TTTCTTTCTG ATCACGGTGC TGCGTTCATT GAAGGAGAAA CAAACATGGG TTGGATTCCC TGTTCTGGAT ATTCAGGCAC
TAAGAACAAG ATTGATAAGA TGGAAGTTCA GGACAGTCTC GTTGGTCAGA TCAAAGCCAC ACCAGGAAAG TTGAAGAGAA
ATACATCCAC AAATTCAAAA GATACATCTA AAAATGGGAA CCCTGATCAC ATTGCAGCAC AGACATTCTC ATTCCGCGAG
TTGGCAACTG CAACTAGAAA TTTTAGAGCT GAGTGTCTTC TGGGAGAGGG AGGCTTTGGT AGAGTGTACA AAGGACGTCT
GGAAAGTATT AATCAGGTTG TTGCCATTAA GCAACTTGAC CGAAATGGGC TCCAAGGAAA TAGGGAATTC CTTGTTGAAG
TGCTGATGTT AAGTCTACTT CATCATCCAA ACCTTGTCAA CCTTATTGGT TATTGTGCTG ATGGAGATCA AAGGCTTCTA
GTTTATGAAT ATATGCCGTT AGGATCCCTG GAAGACCACT TGCATGACAT TCCTCTTGGC AAGAAACGAC TAGAGTGGAA
TACACGAATG AGAATAGCTG CTGGTGCAGC CAAGGGATTG GAATATCTAC ACGACAAAGC TAATCCTCCT GTCATCTACC
GTGATTTAAA GTGCTCTAAC ATTTTGCTTG GTGAAGGGTA TCACCCAAAG TTATCTGATT TTGGTTTGGC TAAGCTTGGC
CCAGTTGGGG AGAACACACA TGTATCAACA AGAGTTATGG GGACTTATGG ATATTGTGCT CCAGAGTATG CCATGACTGG
TCAACTGACT CTGAAATCAG ATGTTTATAG CTTTGGTGTA GTTCTTCTGG AAATAATTAC CGGAAGGAAA GCAATTGACA
ATTCAAAATC TGCTGGAGAG CAGAATCTTG TTGCATGGGC TAGACCCTTG TTTAGGGATA GAAGAAAGTT TTCTCAAATG
GCTGATCCAA CACTCCAAGG TCAATATCCT CCGAGAGGAC TATACCAAGC CCTTGCTGTT GCAGCAATGT GTGTTCAGGA
GCAGGCTAAC ATGCGTCCAG TTATAGCTGA TGTTGTAACG GCTTTGTCGT ACCTTGCTTC ACAAAAATAT GATCCCAATA
CACACACAGT CCAAAACTCA CGCCTTGCTC CGGGTACTCC TCCTAGAACC AGGAGGGGGC TATGATATGC AGCTCATGCT
TGGTGGATAC AACAAAATCT GGAGAAATAT TCAAGTATAT TATTTAATGG GCTTCTCAAC TATAAGGTAT AGGTTTATAG
ATGTTAATAT CAGTTGTCCT TTGGTGGTGT TCTTTCAGTT CATAGTACAG TTCCAAAAAT AGAACATAAT TCTGGAATTC
TGTTCTAGTC CTGTACTCAA AACCGCTTCC ATTTATTATG TCTGGAGCTA AGATAGTTGC TCCACCTTTT TCCTTTTGTC
CAAAATTTTA TTTAAGACAA ATTGCTGGAC TCATAATTCC TGTGCCTTCT ATCTTGACAA TTTTCCTGCC TTTGCTTCTT
TATGCTGGTC TTCTTGTACA GTTTATTCAG CTCTGTG

[show][hide][copy]CDS

>Vigan.04G324500.01
ATGGGTTGGA TTCCCTGTTC TGGATATTCA GGCACTAAGA ACAAGATTGA TAAGATGGAA GTTCAGGACA GTCTCGTTGG
TCAGATCAAA GCCACACCAG GAAAGTTGAA GAGAAATACA TCCACAAATT CAAAAGATAC ATCTAAAAAT GGGAACCCTG
ATCACATTGC AGCACAGACA TTCTCATTCC GCGAGTTGGC AACTGCAACT AGAAATTTTA GAGCTGAGTG TCTTCTGGGA
GAGGGAGGCT TTGGTAGAGT GTACAAAGGA CGTCTGGAAA GTATTAATCA GGTTGTTGCC ATTAAGCAAC TTGACCGAAA
TGGGCTCCAA GGAAATAGGG AATTCCTTGT TGAAGTGCTG ATGTTAAGTC TACTTCATCA TCCAAACCTT GTCAACCTTA
TTGGTTATTG TGCTGATGGA GATCAAAGGC TTCTAGTTTA TGAATATATG CCGTTAGGAT CCCTGGAAGA CCACTTGCAT
GACATTCCTC TTGGCAAGAA ACGACTAGAG TGGAATACAC GAATGAGAAT AGCTGCTGGT GCAGCCAAGG GATTGGAATA
TCTACACGAC AAAGCTAATC CTCCTGTCAT CTACCGTGAT TTAAAGTGCT CTAACATTTT GCTTGGTGAA GGGTATCACC
CAAAGTTATC TGATTTTGGT TTGGCTAAGC TTGGCCCAGT TGGGGAGAAC ACACATGTAT CAACAAGAGT TATGGGGACT
TATGGATATT GTGCTCCAGA GTATGCCATG ACTGGTCAAC TGACTCTGAA ATCAGATGTT TATAGCTTTG GTGTAGTTCT
TCTGGAAATA ATTACCGGAA GGAAAGCAAT TGACAATTCA AAATCTGCTG GAGAGCAGAA TCTTGTTGCA TGGGCTAGAC
CCTTGTTTAG GGATAGAAGA AAGTTTTCTC AAATGGCTGA TCCAACACTC CAAGGTCAAT ATCCTCCGAG AGGACTATAC
CAAGCCCTTG CTGTTGCAGC AATGTGTGTT CAGGAGCAGG CTAACATGCG TCCAGTTATA GCTGATGTTG TAACGGCTTT
GTCGTACCTT GCTTCACAAA AATATGATCC CAATACACAC ACAGTCCAAA ACTCACGCCT TGCTCCGGGT ACTCCTCCTA
GAACCAGGAG GGGGCTATGA

[show][hide][copy]PROTEIN

>Vigan.04G324500.01
MGWIPCSGYS GTKNKIDKME VQDSLVGQIK ATPGKLKRNT STNSKDTSKN GNPDHIAAQT FSFRELATAT RNFRAECLLG
EGGFGRVYKG RLESINQVVA IKQLDRNGLQ GNREFLVEVL MLSLLHHPNL VNLIGYCADG DQRLLVYEYM PLGSLEDHLH
DIPLGKKRLE WNTRMRIAAG AAKGLEYLHD KANPPVIYRD LKCSNILLGE GYHPKLSDFG LAKLGPVGEN THVSTRVMGT
YGYCAPEYAM TGQLTLKSDV YSFGVVLLEI ITGRKAIDNS KSAGEQNLVA WARPLFRDRR KFSQMADPTL QGQYPPRGLY
QALAVAAMCV QEQANMRPVI ADVVTALSYL ASQKYDPNTH TVQNSRLAPG TPPRTRRGL*